RNA id: AMCG00008121


Basic Information

Item Value
RNA id AMCG00008121
length 8594
RNA type mRNA
GC content 0.49
exon number 15
gene id AMCG00008121
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43159569 ~ 43175126 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGAGCAATGGCAGACTGGCAGGGCCAAGGGCAGCCCTTGATGTGGACCGCATCCATGGGCGACCCAGCCACAGAGCTGGACTCTGGGGTGGAGGACGATGACGACCTTGCACACCGGCCAGATCGCCATGATGATGGCTCCACTATCTTCATCGCTTTCCAGGGGAACATGGAGGATGAGGACTTCCAGGAGAAGCTTGACCACATCTTAGACAATAGGATGCAGCCTCGGCGCGTAGAGCCCTGGAACAGCGTGCGTGTCACATTCAACATCCCCCGTGATGCTGCTGACCGGCTGCGTCTGATTGCGCAGAATAACCAGCAGCAGCTGCGAGACCTGGGCATCCTGTCTGTGCAGATAGAAGGAGAAGGTGCTATAAATGTAGCTTTGGGGCAGAACAGAGGTCAAGAGGTCAGAGTCAATGGACCCATAGGGGGACCCAGTCAGATGAGAATGGATGTTGGCTTCCCCATGCAGCCAGGTCCAGGAGCCATACGGATGAACAACCCGGCTGTGTCCATGGTGCCCTCTGGCCCAGGCATGGCTACACAGGTGATGGTCCCAGGAAGCAGTGCCCAGATGCAGGCCAGGGCAGCCCGGCCCGCCTCCCAGACAGACCCGATGGATCCGTTGCTGTCAGGTATGGCTGTGCAGCAGCaggtccagcagcagcagcagcctcaTATTTCAGCTGCCATGCCACCCCAGGCCGCCCTCAACTCAGGGACCCATGGTACCTGTCTGGAAGAAAATGCCCCCGCAAGTACAAATGGGAACACTCACCCTCCTCCTCCGTACCCTTATGGAAGCCAACAAACTGGCCAGGGCTTCAATGCCATgggacagcagcagcaacagtcAGGGAACATCCAGTTTGCAGCCCCTCAATCCAAGGGTCTTCAAGGACCTCCTGGGGTCGCCGGCCCAAGggtccccccccctccccctccatctGCACCGCCACAGGGGCACCTCACCGCCAAGTCCCCcgtctcctccccctctcccttccaGCAGGGCTCTCCTGGGACTCCTCCAATGATGGGGCAGAACCAGGCTCAGCTGGGACCCCGCCCCACAGTCCCCCAGGGTTTCTCCCAAGCAGTCAGCTCCCCGGGCAGGGCTGTGCTGGGACAGCAGTCTAACTTCATGGTAATGTCCCAGCAGGGACAGGTGCCCCACTCTGGAATAGGAGGTATCCAAAAACGGATGCCCATGGGATTCCAGAATGTGCAAGCCAATCCGAACTTCCTCCAGGGCCAGGTGACCCCTAGTACTGTAGGGGCCCCTGCAAATAACACCAGTTCCCAACTACAGAGCACCCAGAGCATTCAACATGCAGgaGGCCAGCCTTCTGTCTCAGCTCCTAACCACATGCAGGGAACCCACGGTCAGCCCAATGTGATCCAGAACAACATAATGGGCCTTCATGGGGGCATGAACAACCAGCCCCCTGGGAGCACTGCTGGAGGAAGCATGGGACAGCCCTCCCAGGGCCTCCAGACCCAGATGATAGGAATGCAGCCCCAGCCCATCACCTCGTCCCCTGGACAGACAGTCCTATCCAGGGCCCAGCTTGTGAATCCGGGGCAGATGCTGGTAGGGGGTCAGAACCCCAACATGGGTCCTCAGCGAGGAATGACACCTCCCAAGCAGATGATGCCCCAGCAGGGCCAGGCCATGATGCAAGGGCATGGGCAGATAATGGGAAACCAGAATCACCAGGTCATCCTGCAGCAAAATCCCATGATGGAGCAAATGATTGCCAATCAAGGGAACAAACAGGCCTTTGGGGCTAAGGGTCCCCCGGGTGTCATGCAAGGACAGATCAGGGGGCCGTCACCTAATGTGCAAGGGGGTATGGTCCAGTTCCAGACTCAGATAGGTCAGCAACCCCAGCAGCATCAGCAACAACAGGCAGCACAGCAgccacaacaaccacaacaaattCCTATGAATGGTAATCCCAACCAAGTAATGGGTCTGCATGGGCAATCCATGAGACTTCCAGGAGGCCACCATCTTgtccaacagcagcagcagcagcagcagcagcagcagcagcaacagcaacaacagcagcagcagcagcagcagcagcaacaacaacaacaacaacaacagcagcagcagcagcagcagcagcaacagcaacaacagcagcagcagcagcagcagcaacaacagcagcagcaacagcagctacAGCAACACGTGGCACAGCAGTCACAACAGCTTGTTGACCCCGGTGGTGCTGCTGGAGAGATGGCCTTGCAGCAGATGCTCCCTGATGTTCAATCCCAGCAACAAGGAATGGTGGGTCCCCCTCATATGCAAGTTGGCAACGGACATTTTCCTGGGCATGGGATGCCTTTCAATGCACATTTCGGAGGGCAGATGCCCATGGGTGGTCCTTGTGTACAACCTGGGGGCTTCCCAGGAAACAAGGACGTTACTCTGACTAGCCCACTGCTAGTCAACTTGCTGCAGAGTGACATCTCTGCAAGTCAGTTTGGTCCTGGTGGTAAGCAGGCTGGAGCCAACCAGACAAAGCCCAAGAAAAAGAAACCGCCGCGCAAGAAAAAGACTAACAACAATGGAGGGCCAGCGGGACCGCAGCCAGAGGAAGGGCTTGGTCTCGATGTGCGGCCCCCTGGCATGGATGATTCGGATATGCAGTCCTTGAGTGGCGAGCACGGAGTGGGAATGGATGCTGCTGGCCCCAAGCTCACAGACTTTGCCAATCGTCCTCCAGGAGATGGACAGAGGATGCCAGTTTCCCAGCAAGGGAACATGCCAGTGATGATCAGCCTCCAAGGAAGCTCCCCAGACAAACCCAGACTCCCTCTCATAGTTAGCTCACAGTTAACTGGGGTTGCAAGGAGAATGCCTCTCCAGGATGCAACACAGGGTGGCCCATTGCTGGGCCCTGAGGATGTTCCTGGTATGCACTCTCTGCAGGATGGATCAAACCTTGAAATGGGTCACCAGGCTGGAAATGGTGGTCCACAATTAGTTGGTAACCCAGGTTCTAACCAGCTCCTGATGAAGCCTGGGCCTTCACCAATTCCCCAGCACCAAGGCGCCAGCcctcagcagcagcaacagctgcagcagcaacaacaacaaccaacaGGCCCCATGCCTGGGTCACATGGTCTCCATTTCCCTAATGTTCCCACCACTTCGCAAACATCCCGGCCCAAGACACCAAATCGGGCCAGTCCGAGGCCGTACTACCCCCATACGCCTACCAACCGCCCTCCCAGCACAGAACCCTCTGAGATCAACCTCTCTCCTGAAAGGTTGAATGCCTCCATCGCTGGACTCTTTCCACCTCAGATCAATATCCCTTTGCCTCCAAGGCAGCCCAATCTAAATCGAGGCTTTGATCAGCAGGGTCTAAATCCTACCACTCTGAAAGCCATCGGGCAGGCACCGGCCAGTCTAACACCTCTCggtaacaataacaacaacggACAGCAGACTTTCTCTTCGGGCAACAATGCAGGAACTACAGGCGGGAAAGTAGATAAGCACTCCACAGGAGGGCCTGCAAAGAGGGCAAGTCCAAGCAACAGCAGGCGATCGAGCCCAGCTTCTAGCCGTAAAACGACCCCCAGTCCAGGACGGCAGAATGTAAAGGCCAAACTTGCTGTTGCTTCTCCCCAACACCAACAACCCATGGTGAACCCTCAAAACGTACTGGTTCATCCTCCTCCTGTTTTGTCCAGTCCTGTTAGCAATACCTTGCCACCTAGTACTCTGGGGACACAGCACATTCAGAGTCCTTTCCCTGGTATCCATGCAAACCCTCCTGATATGAATAAGGAAGGGCAAACCGTACCAATGGAAGCGCGACAGGCAAACCAGCCTCAAAGAGACTCTTCTGTCTTAGAGACAAAAAGTCCCCGCATAACTCAGGAGCAGAAAACTGCAGTAGAAGAGTCAGCTAGACGGGAGGCCTTGGCTCCAGAGAAGGTGCAGCCACCGCTGTCTGCTGAAGATGtatccagagctgctccttcccCTGCTTTGAGAGAACCCCCAACTTCTCTGAGCCAGCTGCTGGACAATTCAGGTGCCCCCAATGTTTCTTTGAAGGATGGTCCTCCAGAAGAAGAAAAGACTAGGAAAGAGAGTCCTCGCTTCCCAGTGGAACAGGAGGTCCCTCGGAATCCTAGCACTTCTCAGAGCTCAGATGCAGGTGCTCCTGTGATTGCGAAAGAGCCCGACCCCATCCCAGTTGCAAATGTCCCTGCTGTTTTGCAAAGGCCACCATCGTCAACATCAGTCCCTTCCAAACAGATTACCGTCTTTGTGACATCCAATACCATCAGTTCTTCTTCTGCCACTTCCTCCCATGTGCTGCCCGCCTTAGTGTTGTCTAATAAGAATATTAAACCCTCTGAAAATCAGGCATCCACCTCTAGTTCTGCCAACTCCCGCCCAGCCCAGTTCATCCCAGGCTCAGGCCCAAGCACAGTGTACATTAGTCCAATCTTTCAGGTTCCTGCCTCTCCCATTCCCCCTACCACAAATGTCATGCCCCAACCAGTAGCGCCTCTCCAAATGCAACCTAATATACAATTTTCCCCAGCACCTGTAATCACCCAGCCTTCTCCGGTCAACCAATCCAACACCCAGACCTGTCGGCCTATGGTCCTGGGACAAGTTCAGTTACCTACAAACCAGGGGCCTCCTGTCAATATTTTTCCCCAGCCCCAACAGCAATGCTCTGAAACCCCAAAAGAAAGCACCCCTGCTGAGATTCCTCAAGCCAAACCCAACACTGCTGAGCTCCCTTCTCCCCGTCCAAATGCCACTCCTTCACCATCCTCCCAGCCTCTAGGTTCTTCTCCACCTTGTGCCAGTCCAGGAGCTGTTAATGCCAGAAGAAGTCCAATGTCCCCTACAACTGCATCATCCAAGAACAAGCTTGACAAAATAGGGCAGACCGGGATGACCAAATCGAGCGGGGGTGTGCCTGACTCTCCGCAAAAAAAAGAGGACCATCCAGCACCTTCTGAGGTTGACGTGCAATCAGCGGTGGCTTCTGGGGGCAGACTTCAACAGGCTCCTCCTGTAAGCATCCAGACAAGCCCGTCTGAAGGAGAACAACCTGCCGCCAGCCAGAAAACTATTCCTGCCACTTCCCCTGCCCCTTCATCTGCTAGTTCAACTGCTGGATCAGCCTTCACTGGACCTACCAACACTGTAGGCAGTTCCTCCGGTACAGCAGCACCAACTGCTCCCAAAGAGGCACCTTCTGCAGCCCCAGTGGCCGAGACCAGTCAGCCAGCACCACAGAAAGACTTGGCAGAGGACAAAGGGTTGCAAGGGAACACTCAGAGTGCAGCATCTGTTCACCCTGAACCACCGCAACAGGAGGTGCCTGTAGCTGAGAAAACTGgagATGATACAGCTACTGTAACAGAACAGGGGGAAGCCAAGGGCGCGCCTGAGAAGCTCAAAGGCCCAAGCAGACGCAGCTCGCGGGCGGAGAGGGACACGGAGGAGGCGGCTGCTGTGCAGGAGGCGGCTGAGAACGGGCAGAGGAAGAGGTCCACCAGGCCAGGCTCGGCCAACACCACTAACACCGTCAAAGATACAAACACAAGCGCCAGCCCAACACAAGCCAAGCGAAGGAAATCGAAATGACACCTGTACTGTTAACATGtgaattgtaaatgtttgtgaattatttttatcagcttttttttttttttttcctgggctaatttttttttaatgaaagaaataacTGTGTACAgatgattgttttaataattataatattggtGTTGTCTCCCGCAGCAatgtgagtttttattttagagtttcattttcaaatgctggaataataatatttaggCACCTGATTATCAAAATGTCGCAagttaattgtgtaatttttgtTCAAAAACGCTGAATTAAATTTTCTACAAtctttttctgtcttgaagTAAGGATATGGAGGATGTCAGAATCTGTTTTCTTGGATCCTAGTCATGAATTAGCCATTAACTGACATCGGTAAAGATTgttgcattttcagtgttttaacattttagttATGAAATTATACAATACATCTTAAGAAGTGTCCTACCCCCCTGCATATGGCCATGTTTTGGCTCTTTAACTTTCAGTAACACACAATCATAGTGTTCTGGTGGGCTGGTGGGCAAACTTATGAAAAGATTCGTTTTTATCTGTATATGGTGTTCTGAATGCTCTTTTTCTGAGCTTAGGTACTCTGTGTAAATAGATGTGGTTTATTTTCGGCCTTGATTACTGGACCGAAGCTCAGCTGTGACGTTTGTAGCCGGCATCTTAAGCCACGCTAAATGTAAAGGTGCTCCTTTGCCGTCTTCATTTATGGTTTATTCATGAAGCGTCTATAGGCGTTGATTGCAAACTGTGGTGATACCGGGGTTCACAAGTATACAAAGTGGGAGGTGTTATTCCATCACAAAGTTTTTGCAAACAGTCAGTGGAAAGTAAACCTTCAGATTGTCATATGCTTATCTTATAGTTAGTTGTAGATTCATGTAATATCAGCTAGGACAACCTAGTGCAGATTTTGAGGGGTTTCCCAACAAATGCAGACAATACAGAGGTTTAGGACAGATCTTTTACTCTTGGCTTCCCAAATGTGATCCTTGATACTGAAAACTGTACATATCTagactaaatatatattcacatcgTGCACAGGCTCGTGTTTGACTGAGGAAGACCATTTAAAGAAGGTTGAAGCTGACTTGTATTTAACTTCTTGGCAGAAAGCTCTTGGGTTTAATTTAGGGTTAAATTccatttaaaaccaaatatataAAGCCAGACGAGCATGAACAGTCCTTCTGCGTTGTGTACAGTTACATTGGTTTCCCCTCACTACTACTTTAAAAGTCATGCAGCCATCTTTCCTCTGAGACGTGAGAAATTAAGTTACAGTAGGTTCAATTTCTACTGTGATCCTCTTGCCCTACTTCATCCTGCCACTAGCAGTCACTATAAACATTTTGGGGTTCTAGCACCAatcaattaaaagtttaaagtcTTGTCAGCTTTCAGTTCTATTCGTATTGTTCCTAGTGGGTAAAATATACAGAGGTACAGATTTGTACCTTTCTGTAATACAAGCCTTCATTATACTTGtaattaacaaaaagaaaaccaatcaGTACTGCACCACCTGAAATATCACAAGACGTGATGTGTAGAGCCATCACTGGATCGTTGCCCACGATTGTAATGATAATTGCTTGGTTAATTAGATCAAGAATCGATTTTTCTCTTCCGTTGCCAAATGAATGAGGGCTATCATACTACATTTCACCTTGAACCCAGACCTTTAAGAAACATAAATCCATTTAAAGCACATGTTTTTAGCTGCTGCGTGGTTTCTAGTCTAAAAGATGGTCGAACCTGAACCTACCATGTATAATAGTTACCGAATGTTTCATAATGAATATTGTTAGGCAAAAGACAATCTGGTTTTTACTGTTTATAATTTGTTCAAGTGATTTATTGAATGCTTTAACTTGTACAGTTTAGAGAAGTTTGGGATGTGTCCTAGTAATGGAGTAGTGCTCTCCTGGTAACCCCCTATTACAATCAACCTTAACCAGAAATCTTGAGTTTGATTTAAATTGGAGTTGGATGCTGTCTGTTTGTGCGtgttttcttgaaatgtgttttttatttgtattttttgtcttgtttcagaaaacatgttcaaattatTAAACAGAGATGCAATGTGATATATCAGTACAGAGACTGAATAAAAACCATACAAACCCAGAACATGTGCATGCATGTTGGTACAGAGGGGAAGTCTGAGCTGTGAAAGAAGTCTTGTCATGCTAAATTCACAGATTTAACACAGTTTTCAGTGTTTCCAGAAATACAGAGACGAGCGGTTATTTAAAATGCGTTTTGTACgttttttaaaagtgtgttgttttttccttttccaaagtGCACCCAGTCTTGCCAGTGACACCAGTTCCTTTGATGTTTTTCATATCATTGAGCTGTTTCCCTGTTTATAGGACAAAACCGTCCATTACAGTTTGTGGGTTTTGTTTAGCCTCCATACAATGCTGTgccagttatttttcttttccctatGACACAGTTTCAAGTGTAGCCCATTCAAGGTTTAAACTGACGGAATAAACTGAAGATAGCATAGCAAAGTTGAACCCATTGGGTTTATTTCTCCTTTCAGTTGTTCCCGATTATactgataaaataatatatttttaaaccaacaCGAAAACATTGAGTTTGAGCttcaaatgtcttttttatttttatttgatttttttctacGCCTTTTTTTAAGTCTTAAGTACTGTATGTGAATAGAAGCTAATGTGTGTAACAATGCCTAGGATTATGATAATTCTTTTgaccgtttttgtttttgtggttgtaaATAATTTTGTAGAATATTTCTGACGTTGTAGAAATGGACCAGagtaaaaacacaagaaatgaGATTTTAAAAGGCATATTTTAAGGGTTTGTATCATGTAATTGTGTGATGTTCACAATAAATGTTACTATTTCCTTAAA

Function

GO: NA

KEGG:

id description
K14971 NCOA6, ASC2; nuclear receptor coactivator 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35847 lncRNA upstream 38788 43109050 ~ 43120781 (+) True G28637
TU35743 lncRNA upstream 537412 42621950 ~ 42622157 (+) True G28548
TU35721 lncRNA upstream 572901 42584232 ~ 42586668 (+) True G28527
TU35705 lncRNA upstream 658588 42500674 ~ 42500981 (+) True G28511
TU35677 lncRNA upstream 722341 42432836 ~ 42437228 (+) False AMCG00008102
TU35900 lncRNA downstream 2676 43177802 ~ 43201203 (+) True G28678
TU36139 lncRNA downstream 718983 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA downstream 719059 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA downstream 719059 43894185 ~ 43895128 (+) False G28862
TU36226 lncRNA downstream 878839 44053965 ~ 44056608 (+) True G28931
AMCG00008120 mRNA upstream 3497 43144805 ~ 43156072 (+) True AMCG00008120
AMCG00008116 mRNA upstream 103884 43052668 ~ 43055685 (+) True AMCG00008116
AMCG00008119 mRNA upstream 141118 43012508 ~ 43018451 (+) True AMCG00008119
AMCG00008115 mRNA upstream 397024 42761526 ~ 42762545 (+) True AMCG00008115
AMCG00008111 mRNA upstream 445990 42704984 ~ 42713579 (+) True AMCG00008111
AMCG00008127 mRNA downstream 43973 43219099 ~ 43223126 (+) True AMCG00008127
AMCG00008130 mRNA downstream 57184 43232310 ~ 43251526 (+) True AMCG00008130
AMCG00008128 mRNA downstream 77471 43252597 ~ 43259195 (+) True AMCG00008128
AMCG00008132 mRNA downstream 117543 43292669 ~ 43305530 (+) True AMCG00008132
AMCG00008141 mRNA downstream 161815 43336941 ~ 43338038 (+) True AMCG00008141
TU35886 other upstream 10526 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 51327 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 1166192 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 2912331 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 3100183 40056632 ~ 40059386 (+) True G27974
TU35919 other downstream 117470 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 1848022 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 1974303 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 2165470 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 2265387 45440513 ~ 45441064 (+) True G29183

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000021_00478677_00491078.mRNA True 5212 mRNA 0.49 13 CI01000021 478677 ~ 491078 (-)