RNA id: AMCG00008123


Basic Information

Item Value
RNA id AMCG00008123
length 2422
RNA type mRNA
GC content 0.47
exon number 16
gene id AMCG00008123
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43125754 ~ 43131680 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGCACTAAagtctgatttatatttttcacatattcATTTTATCAATGCTCATTGTTCCTGTGCAGTTaaattggggggtgggggtgacttacaattgatCATTTGCTATCATTCAAAGCACGGAGGATAAAAGGAAAAACTGGTAATCACAGAAACTGGAATATTCACatttagaaggaaaaaaaaaagtgtgtgtgtgtgggtgggaaaaaaaaaaaaaaaaaaacacaaccaaagcTGACTAAAATGGACGATTCTAGGTCCTACCATGCTAACTGTCAGATCTCTCTGAGTGAGGTGCTGGAGTTGCAGGGCCAGCCCGTCAGCGAGGAGCAGGCTTGGGCTCTCTGTCACCAGCTGTGCTGCCTGATGGTCCAGGACCAGCGCCTGCACGGCTGCGGGGACAGGGGGCCCTGGAAAGCGCCCAGGATCCGCGGCGCTGAGAGCATCCTGCTGAAAAACGATGGCACCGTGTGTCTAGCAGAGAACAGCATTGATGCATCTCTTGAGTTCCAGACTGAAGATGAAGTGGTGGATTTCATTGGGCGGCTCATCTACACCTGCCTGGACTGGGGTTTGGGCAGCAATGTGGAGAGGGACCTGAGTGAAACTTTGGAGATCTTTATCTGCCAAATGACTAAACTGGACTCCTGTCACAGGAGAAGAGGGGAGCCTTTTCAGCCAATCTGCACATTCTCCGAAGTCATTGAGGTGTGCGAGAACCGCCTGTACAACCCAGCCAAGGCTTCCCACCATTACAAAGCCATCTGTTCCATACTGTTTGCAGAGACCATTGACCTCTGCCAGTATTTACACAAAATCCAGCATACAAAGGAGACCCTGCAGAAACTGGTAAATAAACCAGAATGCAGCATTGTTGCTCCAGTTACAACAAACTGGGTTTTCTCCTGGAGACACGTGATCGATGAGTTAAGAAGAGGCGTGAACCTGAAGGCCAAGTCACCGGGCCGCAATGTTAGTGCTCCGTTGCCCACTGAGCTCTCCCCCTACGAGCAGCTCCTGAAAGACATTCAGTACAAGAGGTACAATCTCCGCAAAGTCAAGACGCTGGATAACCTGCCGAAGCAAACTGACCCCCACGGTGCTCTTCTGGATTTTGTTCGGTCCAACCCTGTATTGAGGCCTGCCTCGTCCAGAAAACTAAAGTCACGTCCCAAAGAGGAGGCCAGTCTTCATGAGCTGCTGATGGAAGAGATCCGATCTGCCGCCAAGCTGAGACCGCTGTCCTCTCGCAGAAGGAGGGCTGCTTTGCAAGATAACTCTCCTCCGAAATGTGTCATCTCCATGTCAATCTATGAGGACTCCTCCTTTTCTGAAGATTCATTTTGCCTGATTAATTCCATTCCCAAACCAGATCTTGGTGGATTTGGGTCTGAGGGTGCGAGCAGAAATATTGAGAGCAGCGATGGCAAATTGTTTGAGAACAATTGCAACAGAAGTGATCAAGATCTGAAGTTCTCCCCTTTGCTGTCATCGTCGCCGGTAGATTTGGAATCCTGCAAGTCTGAATACAAACGGAGGTCCAAGTCGTTTGATGGCAGCATTGAACTGGAGAGAAGGAGCTGCTCTGGGCCCTGCAAGCCTCTCACGATTGCTGATGTGATGAAGATGCGTCAGATGGAGATGGGAAGTTTGCAGAACCTATACTACACAAACTGGAGGGTATGTTCCTGTTGCTATAAGAGGAGCTTGTATTTTACCTGGCACAACTCTTGCTACTTCTGCAACAGGGTTGTGTGCCCGGAATGTTGCATGGagATACTGCTGCCCCACAAATGGTGCGTGAATCTTCCAGTGAGTTTCTTTAAGATCATTGTGACCAGGGAAGCGGAGCTGAACGGAAAGAACCAAGTGAAAAACTTCTGGCAGGAACGCTGGGACTGGGACAGTTCCAGaGTGCCTCTGGTCCTGGATTCAAGAGTAACCGAAACAGCCCCCCAGCACAGACTTGCAATGAAGGACTGGTACAGCAACGACATCTGTGTGGGGTGTAAGGGTTTCCTTATTAACGCCTGTGACTCTGTGATCAGTAGGCATGCAGCAACTGTACCAAGAGAGATTTGATGATTGTGAACCTGTCCTGTGGGATTCCCTTTTCACAAACCCCTTCTATAGCTAAAGCTTGTGGAAAAGCCCAATATGCCTTCAACACTGCTCCCACCTGaacacttttgttttccccccaccAAACTGGATTTGTTCTGTTGGTTTTTCCCTTTTATATGTATTGCACaaattttttaaatcactccACGCACGTGGCACTTTTATTAAACCAAGCACGTATTTTCGTATTCTATGAATTTTGCAAAgtcttgctctctctcacacaagcTTTAgggttttatctttttaatgttttatctttGGAATTCTAAATAAATATGCCATGAAATTTG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35870 lncRNA downstream 27281 43097198 ~ 43098473 (-) False AMCG00008124
TU35727 lncRNA downstream 530894 42522805 ~ 42594860 (-) True G28532
TU35706 lncRNA downstream 624758 42500677 ~ 42500996 (-) True G28512
TU35703 lncRNA downstream 648764 42475720 ~ 42476990 (-) True G28509
TU35673 lncRNA downstream 724680 42360908 ~ 42401074 (-) False AMCG00008104
TU36079 lncRNA upstream 379080 43510760 ~ 43583413 (-) False AMCG00008144
TU36187 lncRNA upstream 731927 43863607 ~ 43893808 (-) True G28900
TU36196 lncRNA upstream 762499 43894179 ~ 43895951 (-) True G28907
TU36208 lncRNA upstream 864438 43996118 ~ 44000866 (-) True G28914
TU36272 lncRNA upstream 1355530 44487210 ~ 44487419 (-) True G28973
AMCG00008124 mRNA downstream 5590 43097111 ~ 43120164 (-) True AMCG00008124
AMCG00008125 mRNA downstream 42072 43062834 ~ 43083682 (-) True AMCG00008125
AMCG00008122 mRNA downstream 82124 43039398 ~ 43043630 (-) True AMCG00008122
AMCG00008117 mRNA downstream 89323 43029856 ~ 43036431 (-) True AMCG00008117
AMCG00008118 mRNA downstream 96764 43015356 ~ 43028990 (-) True AMCG00008118
AMCG00008126 mRNA upstream 2070 43133750 ~ 43143331 (-) True AMCG00008126
AMCG00008129 mRNA upstream 46056 43177736 ~ 43192496 (-) True AMCG00008129
AMCG00008131 mRNA upstream 73778 43205458 ~ 43210346 (-) True AMCG00008131
AMCG00008134 mRNA upstream 101553 43233233 ~ 43244258 (-) True AMCG00008134
AMCG00008133 mRNA upstream 137337 43269017 ~ 43270574 (-) True AMCG00008133
TU35782 other downstream 361100 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 1275864 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 1923929 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 2108506 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 3621162 39500321 ~ 39504592 (-) True G27861
TU36269 other upstream 1286194 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 2919015 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 3349266 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 4582254 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 4992245 48123925 ~ 48124682 (-) True G29544

Expression Profile