RNA id: AMCG00008126


Basic Information

Item Value
RNA id AMCG00008126
length 2079
RNA type mRNA
GC content 0.53
exon number 12
gene id AMCG00008126
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43133750 ~ 43143331 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTAATTTGAGTGGGACACACGTTTGTTAACCGAGTTGCCAGTTTGCGGACGGTCCCTGAAACAGCTGATGTGAAAGTTCAAACCAATCATAACTTCCTGAACTAGAGAATCGTCCTGAACTACGAGACTGCAGTGGCAAATTATGAAACCAAAATGAATTAAGTTAGACTGCAGCACAAGTATACCGGCGGGCTGGCAGAGACTCCCTACCTTGGCTGGGGAAGATGGATCGCACAGGACCGGGGCAGAAATACTTCATAGTCACAAAGGGCAAGGCCAAGCCGGGCAAAAAAGGCATTTCCAAGGGCTGTATAGGATATGTtgagacagaaaccaaggaggaGGTCATCGGCCCGGTCTTCACCAGCGGGGTGAAGGGCAGTGTCAAGCTGGAGAAGGAGAACCTGCACATGCTTTCCAAACACCAGGCTCAGTTGCTGCTCTTCGTCTCTCCCTCCTCCAAGAGGCTGGAGGTGCTGCAGAAAGAGGAGCTGTTCAGAGCCATCTGCTGCCTGGTCCAGAGTGACGTGGTCGTGGTGCAGCACAAGAAGGAGTCGAAACCAGGCGTTGTGCAGGGAGTGATGCAGATTGTGAGGAAAGAAAGTTACGGGGACGTGACCATGCTGGGGTTTGACGTGGAAATTACGGAAACTGAGAGAAAAGCTGCTTTTAAGAAAGAGTCCGCTCTTCCTTTATTCAGTGCTGGAGATATCCTGAAGGTCATCATTGATTCTCCACCCAGCTCCCCTCTCCTTGCAGGCAATAAGCAGGAAGCTCTGAACATGAAAGATGTCTTGGGAAATAACTCGGACCCAAATCTGGTCCAGAGAGGACAAGATAGTAGAAACTCTCAGATCTCTAGGGGCTCTGGACCCCCCCGGATGCTGCGATCCACCCTGGAGGTGGGCTCCATGGTGGAGTTCAAGGCCATCAATTTGGCTACCCTCTATGGAGTGGTGCGATGGATTGGGGTGCCTGAAGGAAAGAACCAGCCCTGGGCTGGGGTTGAGCTGGATTACGAAGTGAAAGGCTGCACAGATGGAAAGCTTGGGGTTCATCGGTACTTCACTTGCAACGGGAACAAAGCCATGTTTGTGGTTCTGAAGAACTGCAAGCCAGACAGCAGGTTCCTACCTCTGCCTCCTTACAAGGAAGCCCCTCAATACCATGAGCTCCAGTCAGATGGAAGTTTTGAGGAGGATACAGATGTGCCCCCCATCCCTGAATCAAAAGTCCTGGCACTGCTGGAGGGCAGGATGAAGGGCATCCAGGGGCACTACAACTCATGCTACCTTGACGCATCTCTCTTCAGGCAGGGTTTTGTTCCTGCTGAGAATGTGATGAACCTCCGGAAGCTTCTGGGATGTGATACATACCTCACTGAAGAAAAAGACCCAGAGGAGTTCATCAGTATCCTCCTTAATCAGGTCCTGTCTGTGGACCCACTGCTAAAGATCAGGTCCAATGGTAAGACCCAGGACTCCTACACCTTTCAGATCATCCTGGAGAAAGAGCAGGTGGTGAGCACGCCCACTGTCCAGCAGCTCCTGGAGACGTCCTTCTTGACCTGTGACCTCAAATTCCAGGAGGTGAGCCCCCCCCGGGAGTGTTTTGTCTGCGGTGGTCTGGCGGCGGTGGAGTGCTACGCCTGTGTGAGCGATCGCAGGCTCATGCCAGGCAGGATCAAACAGTACTGCAGACCCTGTGAGAAACAGGTCCACTCCCACAGGCTGCGTCGGGACCACCGACCCAGGGAGCTCACCCTGCCCCACTCCTTCAGTTCGGCTGACCCTGTGCCTAGGCAGAAGCTGGAGCTGTTTGCCGTGCTGTGTATCGAGACCAGCCACTATGTCTCCTTTGTGAAGTACGGGCCGGGGAAACACTCCTGGCTCTTCTTTGACAGCATGGCCGACCGTTGCGAGATCAGGGCTTGTCCACAAGTGGGCGacttcctctcccagtctgagGACGACCTTGCTAAAGCCGACCCGTGTAACATGGATGAGTCTGTGAAGAGGCTGCTCTGTGATTCCTACATGTGCATGTACCAGTGCCCGGCACTCTCTCTGTACAGATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35870 lncRNA downstream 35277 43097198 ~ 43098473 (-) False AMCG00008124
TU35727 lncRNA downstream 538890 42522805 ~ 42594860 (-) True G28532
TU35706 lncRNA downstream 632754 42500677 ~ 42500996 (-) True G28512
TU35703 lncRNA downstream 656760 42475720 ~ 42476990 (-) True G28509
TU35673 lncRNA downstream 732676 42360908 ~ 42401074 (-) False AMCG00008104
TU36079 lncRNA upstream 367429 43510760 ~ 43583413 (-) False AMCG00008144
TU36187 lncRNA upstream 720276 43863607 ~ 43893808 (-) True G28900
TU36196 lncRNA upstream 750848 43894179 ~ 43895951 (-) True G28907
TU36208 lncRNA upstream 852787 43996118 ~ 44000866 (-) True G28914
TU36272 lncRNA upstream 1343879 44487210 ~ 44487419 (-) True G28973
AMCG00008123 mRNA downstream 2070 43125754 ~ 43131680 (-) True AMCG00008123
AMCG00008124 mRNA downstream 13586 43097111 ~ 43120164 (-) True AMCG00008124
AMCG00008125 mRNA downstream 50068 43062834 ~ 43083682 (-) True AMCG00008125
AMCG00008122 mRNA downstream 90120 43039398 ~ 43043630 (-) True AMCG00008122
AMCG00008117 mRNA downstream 97319 43029856 ~ 43036431 (-) True AMCG00008117
AMCG00008129 mRNA upstream 34405 43177736 ~ 43192496 (-) True AMCG00008129
AMCG00008131 mRNA upstream 62127 43205458 ~ 43210346 (-) True AMCG00008131
AMCG00008134 mRNA upstream 89902 43233233 ~ 43244258 (-) True AMCG00008134
AMCG00008133 mRNA upstream 125686 43269017 ~ 43270574 (-) True AMCG00008133
AMCG00008138 mRNA upstream 206768 43350099 ~ 43350744 (-) True AMCG00008138
TU35782 other downstream 369096 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 1283860 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 1931925 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 2116502 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 3629158 39500321 ~ 39504592 (-) True G27861
TU36269 other upstream 1274543 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 2907364 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 3337615 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 4570603 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 4980594 48123925 ~ 48124682 (-) True G29544

Expression Profile