RNA id: AMCG00008128


Basic Information

Item Value
RNA id AMCG00008128
length 1878
RNA type mRNA
GC content 0.51
exon number 16
gene id AMCG00008128
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43252597 ~ 43259195 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAAACCTAAAGCGTCCAAGAGAGGATAGCTTCCTCTCCGATATGTGCAAGACGCCAGAAAAGCGGGTTTCTGAAGCCCCCCGGTCGCATGAAGATTATAAGGACTGGGGTGTCGAGGAGACGTGCAGGTACCTGGAGCAGGAGGGCTTCGGCCAGTGGCAGCAGAGATTCAGAGATGAACAGATTACAGGTGTGGGTTTGCCCTACATCACAGACTCGCATATGGAGAAAATGGGCATCAGCCCATTGGGGGTCCGCTTACAGATTCTTCACTGCCTAAAAAAGCTGTGGCAGATTTCTGTCCACAGGATGAAGGTTTTCAATGACCCCATTCACGGGCACATAGAGATGCACCCATTGCTGGTGCGTATCATCGACACCCCGCAGTTCCAGAGACTGCGCTACATCAAGCAGCTGGGCGGAGCCTATTTTGTGTTTCCTGGAGCCTCACACAACCGCTTTGAGCACTCCATAGGGGTGGGGTACCTGGCTGGAAGGCTGGTCCAGGCGCTACATGAGCGACAGCCGGAGCTCAACATCACCCAGAGGGACATGCTGTGTGTGCAGATCGCAGGCCTGTGTCACGACCTGGGACATGGGCCATTTTCTCACATGTTTGATGGAATATTCCTCCCAAAAGCCCGTGCAGGCCACCAGTGGAAGCATGAGACTGCCTCCGTCGATATGTTTAATCACCTGATCGCCGTCAACAAACTGGAGTCGATGATGGAACAGTTCGGCCTGGTTCTTCCAGAGGATCTGTTCTTCATCAGAGAGCAGATTGCTGGCCCAAAGCACACAAGCAAAGGCGTACCAGACAGCCAGGACCAGTCATCGTGGGCCTACAAGGGTAGGGCAGAAGAGAAGGGCTTCCTGTATGAGGTGGTGGCCAACAAGAGAAACGGCATCGATGTGGACAAATGGGATTACTTTGCCAGGGACTGCCACCACCTTGGGATCCAAAACAATTTCGACTACAAGCGCTTTCTGAAGTTTGCCCGGGTGTGTGAGGTGGAGAAAAAGAAACTCATCTGCACCCGAGACAAGGAGGTAGGGAACTTGTACGACATGTTTCACACCCGGAACTGCCTTCACCGGAGAGCCTACCAGCACAAAGTTGGCAATATCATTGAGACAATGATAACGGAGGCTTTTGTGAAGGCTGATCCACACATTCAAATAGAGGGCTCCGCAGGACAGATGTTCACAATCTCCACAGCAATTGATGATATGGAGGCCTACACCAAGCTGACCGATCACATCTTCCAGCAGATTCTGTACTCCACCTCTCCAGAGCTGGCCGAGGCCCGGACCATCCTCCACAACGTGATGTACCGCAGACTTTACAAGTGTATTGGACAAACGCAACCCACATCCCAAATTATCACACCAGATGACTTGGTGAATTTGCCCAGAGAAGTTGCGAATGCATCTCCAGAGAATGCCACTGTTATGCTGAAACCTGAAGACTTCATTGTTAATATAATTAACATGGATTATGGCATGAAGGAAAAGAACCCCATCAACAATGTGCGTTTCTACTGCAAAAATGACCCGACTAAAGCCATCAAAATCCGTAAAGACCAGGTGTCTCAGCTCCTGCCTGAGAAATTTGCTGAGCAGCTGATTCGCGTTTATTGCAAGAAGACAGATGAGGGGAGCATTGCAGCAGCCAAGAAAAACTTTGTGAAGTGGTGTTTCGACAGAGACTTCGTCCAACCTCAGGACGGGGACATTATTGCCCCGGAGCTGACTCCTCTGAAAGAAAGCTGGCTTCGtaatgatgacgatgatgacgACAATGGAAAGGGAGGAAGATCCATGAATGGAGTCCCTATCCATTTGAAGAAAAGGGCCAGGAAAGAACTCTTCTAG

Function

GO: NA

KEGG:

id description
K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35900 lncRNA upstream 51394 43177802 ~ 43201203 (+) True G28678
TU35847 lncRNA upstream 131816 43109050 ~ 43120781 (+) True G28637
TU35743 lncRNA upstream 630440 42621950 ~ 42622157 (+) True G28548
TU35721 lncRNA upstream 665929 42584232 ~ 42586668 (+) True G28527
TU35705 lncRNA upstream 751616 42500674 ~ 42500981 (+) True G28511
TU36139 lncRNA downstream 634914 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA downstream 634990 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA downstream 634990 43894185 ~ 43895128 (+) False G28862
TU36226 lncRNA downstream 794770 44053965 ~ 44056608 (+) True G28931
TU36252 lncRNA downstream 1432346 44691541 ~ 44749908 (+) True G28956
AMCG00008130 mRNA upstream 1071 43232310 ~ 43251526 (+) True AMCG00008130
AMCG00008127 mRNA upstream 29471 43219099 ~ 43223126 (+) True AMCG00008127
AMCG00008121 mRNA upstream 77471 43159569 ~ 43175126 (+) True AMCG00008121
AMCG00008120 mRNA upstream 96525 43144805 ~ 43156072 (+) True AMCG00008120
AMCG00008116 mRNA upstream 196912 43052668 ~ 43055685 (+) True AMCG00008116
AMCG00008132 mRNA downstream 33474 43292669 ~ 43305530 (+) True AMCG00008132
AMCG00008141 mRNA downstream 77746 43336941 ~ 43338038 (+) True AMCG00008141
AMCG00008143 mRNA downstream 132909 43392104 ~ 43410731 (+) True AMCG00008143
AMCG00008142 mRNA downstream 212455 43471650 ~ 43494202 (+) True AMCG00008142
AMCG00008140 mRNA downstream 238093 43497288 ~ 43507053 (+) True AMCG00008140
TU35886 other upstream 103554 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 144355 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 1259220 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 3005359 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 3193211 40056632 ~ 40059386 (+) True G27974
TU35919 other downstream 33401 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 1763953 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 1890234 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 2081401 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 2181318 45440513 ~ 45441064 (+) True G29183

Expression Profile