RNA id: AMCG00008129


Basic Information

Item Value
RNA id AMCG00008129
length 5373
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00008129
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43177736 ~ 43192496 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacaagcGTAAAAACTGCAGATTTGTCAATAATATAACAGCATCAATGCCGTTTTAATGGAGCATTTCTTCTGAGAAGaaaagcctttttatttttttattatgttttaataactaCCTCATTTTAAGACAACCTAAAGCTGTGCTTTAAGAttaaattgtttgtgtgtttttaagtatttttggTCATTACGTTTACAActtaaataatacggcaaaggCAGgCCTTTGTTCCAATACCAAGTGAGACCTTACAATTGCACTACACACGTCTTGCCTCAACTGAGATTTCTGCCAACGGGATCAAGGAGGGCTCGGGCCGAGTGGACGAGAAGAAGCGCTGTAGACACGCAGTTCCTGACTCACTACTTCTAGTAGTAAGCTCTGCTGAGAACCCCAAcaacacacgcatacataccCACATATCCCCCTACTTGGGCCCGGTTCTCCTGCTTCTAGCCTAAGCTCAGCCTCTACAGCCCAGCCATGTTCCAGCGACTTACCAGCCTGTTCTTTGGAGAGGTGGAGGATGTGACCACGGAGTGCAAGGGACCCAAACCCTGTGTCTCAGACGCTGACGAGGAGGGCTGGCTACTGGTCAACCTACCTGAAGGCGCTACTCCTGAGGCCAGCCCCATGGAGGACCTCCTCATTGAACACCCTAGCATGTCGGTTTATGTCTCCACCGGAAACCAGTCCATAACCGAGGAGACGGCGAGCATTGTGCTCCAGGAAACCAGTCAGAGGGTGGAGCCCATGCCCTCGGCTGCACGCAGCGTCTCCGGCCGGCCCACGCGTGGCTCGGTCTCCCAGGTGACGGCCCTGGCCAAGGTGACACAGGTGAGCCGAGTGCAGCGGGCCAAGGCACGAGCCGAGCGGCGCCAACTGAGTCGCAGCCGTATCCAGCGGCAGAACCGTCTGCGGGAGGGAGTGCCTCGTCACAGCGGCCACACCCGCGGCAGCTTCCTGCACCAGCCCTGCCAGCGCCACTTCAACTACTGAGACCCGCCAGCCGCCCACACTAGGCAAACCCCAACCCTTTCCAGTTCTAGTCCTATTGTTTAGTTCACCTGAGTTGTTTAAActttagaaaataaaccatGTTTGTGTACAAGCACTTCTAACATTTTCTGGATTAGCACTCTTGTTATAATAGACTTAACctttccttctccctcccctccctctctgtcactCTTCCTCTGGAGCTAATCAGACCTTAACTGCCAgagtaaaaagtaattaaacaaaaactgctTAAGCCCCGCCCCCACAGCGCACATCTGGACACAATGGAGTGGTAATACTCTACATtgttaccatttatttttctgactaGAGGCCATCAAAGAGGTCACAAAATGAGATGGAGACAGCTAGACAAACTTAAAAATTGGAAAGGTTAAGTCTATGTCAAAGGTCTACCTCTTCACAAAAAAGGAATTTCATACGTTAATGTACACCTGAATGTAAATCTTAACCCTTTtatcagttttcacattttccattcgtttttttttctgtgtttgcaggTGTTGGAATcgtaaaaacttaaaaaaaacattttgatagtTGGTTTTGGGTAGGCCATTGGACAGGGCAGAGTAACTTTTAAGAGGAAGTCAAGTGTATCGCCACATGTTcaactttttttcccttttctattTCTGCCACTGCTCCAAATGTTGGAATGTGGCTTCATCTCAGGTTTAATTTGTCAACTGCTTCACCTCATATAATAGTGAAATAGTGCATAAGTCAAATGAATGATTCAACAGTACATCCTGACAGGCAGTGGTAGTATGAAGAGTTGAGCACTGTGGAGATAGAGCAAGTAGATGATGGTGAGAGAGGCATAAGATTTAAAAAGGCATAAgcagagagatggaaagagaacACAAAGGAACAGAAAAGTAACCATAGGGAAGAAATGACAAGGGTAACTTTAACACACTGTAAATGTCAGTGTCTATAAGctgaaatcaatataaaaaatgtaataggaTTTCTTCAGTAGGGGAACTAAGGACTAAAGGatccatttcaaaatatgttgagtagatatttacaaaaaatatcaaattccATTTTGGAAATCCAGcaataatataatgcaataacaGTAGTTGGGGGTGTTGGGGGGGCACTTAAGCCTTGTACGTACTTCCAAATAATGACTTATTTTTAAGACGTGGAAAGGTATATTTTTCAACAGCTCCATCCTGCATTCCTTTCCACTAATTGTATCTCCATCCCATATTCTGTaagttcaaataaatgtaacatttatgaaTAACctataacacaaaaaaacataattgtttgaTAATGGATCCTTAAGCATCTTGTCCATAAGAGttcaaagaaaatgcatttattgttcCATAGCTCCCAAGTCAAGGTATTTTAAGGACAAGGAAAGGTTAGATGGTGTAGGAGGCTACCCTttagagtttgtgtgtgtgtttcttttgttttatttaaaatacatttgtctgaGGTTGACCTTTACTAAAACGTCCAGCACCTGTGTGAAAAAATGGTTATCAGGCACTACATTACGTATGAAATCCTTTTTATTCCCAATATCAGGGGTTTGACCAATTGCACTACATAGCTGAACCTAACACACCAATGTCTGACTGTTTGAGCTGCACAGCTTTACAGGGGAACCACTATCAGAGAAGGGGACGTGGGAAAATGGCTACTTGGAAAAGGTTTTCCTTTAACCATGTGGCTTGTTTTAACACAGACcttgtttgttcttatttttgtaaCCTCTTTCTTTAAGCACAGGGGAGAACTTGATTTCTAACAGGTGATACTCTAAATGCACTGTCAAAagctgatatatttatttattaatactgattACACTTGAGTTAGCAGTATTAACAGGATGGGGAAGAAAGAAATGCCAATATAAGGCTTAATACACCTTCTTCAGTACTTCAGATATCCAGTTGCTGTTGCAGATCAGTGTTACTTTAAGTGAAGTTCTCCTGTGGCTCAAGCACGTTTGAAGCTTCTTATGTAAGAATCTTACAGTCTCATTCATTGCCTTTTTCTTCAGTAGCAGATCCAAATGTAACAGTGTCCTCCACCtaaagaaatgcatatatttaaatatatatatatacatatatataataactatGGTGCtgaagtatataaatatatatacttaagtTTGTAAATGATATAAGACATGGATGTAAGTTTGCATACTGTTTTAAATTTTTGTGAGTCGAGTTTTAGCGTGTGCCGTTACTTTTCTGAACAGTGAggtctgtgtgtgagaggaaTGTGCTGAAGTCTAAAAACCTAAAAGTTATTGAATTGCttgaaaatgttatcagtgatttttcagtgtaattgttttcatttgtttgtttgttttaaggtgGTTTAAGTCAAGGCTCTCAGGATTTTctggtcttttttctttttagtttaaCTCACCACATGGCGGCTTGCGTCAAAGCGCTAGGTGGGTTAATTCAGGTCAATCTACTACATGAAGGCTCCCTAATCTCtggctaattaaataattattgataaTTATCAACTAcagtacaaataattaaaattgctcAAAGACTCCCTCTAgtgacataaaaataaacactacaatGAAATCTGCATGGGATTTTCCCTTCTTGTCTCCAATCTGTTGGAGGAGGGCAGCTCATTAATAATGTTTGACTTGAGTGGCAGCTTCTGTGCATTATTCATGACAATCCTTCCTCTTATGTCTTATGTTAGTGAGACCCCATCTTTTCCTTAGAGCAAACTGAAAGGTTAGCTAAAACGCCATGTTTTGAGCTACTAACATCACGACCTTTCATTATGATGTCATACTTACATTAGTCTGGGTAACCACACTCAAAATCTAGAGATACTTGTGAAAGGCACTGTTGGAGACTCACAATTCCTTCTGTCAATGTCCTACCCTTTTAACACCCCATCTTTAGCCGTCCATCGATCGACAGTGAGGAGTTGGGCTAGAGAGAGGTggattttgtgcattttatttttaatcattttttattcttttcctggggattttaattttcttgaaaTGTAGATCAGATCCTAACCAGAATTTTCCTTTACACTTTTGTCAGTTCTTCTGTACAATAGTACACAGTAcccatgttgtttttcttttagcaATTATGTATTATGAAATGTTGGTTATAATCCTTTTAAGAAGCAGTGGTGAGTCCagcataaatatgtatttgcagtTACAGAGATGCATTTTGGGAAACCTTACAAAAGAGGATTAATGTAAGGAACACAACAATCCCTGCTCTCCAACACTTCACCCTGATTGCTAAACCACAGTGCCTCTTTGGTTGTCTGTATTCTAAGTACGGTTACAGAGATTTTACAGAATTTCTTGAAGCCAAAGGCATAGAGTACAGTAATTACAAAGTAACATCTAAACAAACAGGGTCAGTTTATGGATCCACCACTGAATCTtacatgtttttcctttcctcctTTTTTGTTCCACGATTAATAATTATGATTGTATGTTTGTGAATGGTGTTTTGGAAGTTCAGAGAATGGCCAAGGTACACTAGGGAGGGAGAATAATAGTGTGTAACTCATGTACAAATTGTGTGATGTGAAAAGGGAGGagttagataaaaaaaaaatggaaataaaaaaatttgcttgtattttttcatattgttaTTAGTAAGGTTGTTCACCTACAATGTTTATACCTGGGGGTTGAATTTTCAGGTTTATTTACTTTCCCTGGGATATAGGAAGgataaatggtaaaataatagATCATCTTTAAAGTCTTATATCATTGATATATAAGACATTCTCTtcccccacaccccacaccgCACACCCCATCcaagaaaatatgaaagaaaaagaaaaggaaagttcAATCCCCATGTGTACTGATGATCATGATGTATCTGATATCTATGGTGTATGTGCCTTTCACTCTTGCATGGTTTGTGATGTTCTGAATAAGTTTCCGTCCCTAAGGATACCAGTCCATGAACAGTAGAGACCTATGCAAATAAAGGATGGGGTTCCAGCATCCATTCTGAACTGCAGGTACCAGAGAAGAGATCAATAAACACTCAGGGTGAAACCTGAATCGTGTCTTCTTATTTGCATCCCTCACAACGTTGATAACCTCAGTTTATAGACTGACCTTggtgtttcaaattaaacaaacaacaaaatgttttccccTACACAGTTTCATCACTTTCCAAAGTGCATCATTCCATCCTACCAGGTATATGGCTCACTTAATATATCTAAGAaataaaattgtacattttaagtcaggaaataactgttttatttgtgatgTGCACCTGGTAGTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35870 lncRNA downstream 79263 43097198 ~ 43098473 (-) False AMCG00008124
TU35727 lncRNA downstream 582876 42522805 ~ 42594860 (-) True G28532
TU35706 lncRNA downstream 676740 42500677 ~ 42500996 (-) True G28512
TU35703 lncRNA downstream 700746 42475720 ~ 42476990 (-) True G28509
TU35673 lncRNA downstream 776662 42360908 ~ 42401074 (-) False AMCG00008104
TU36079 lncRNA upstream 318264 43510760 ~ 43583413 (-) False AMCG00008144
TU36187 lncRNA upstream 671111 43863607 ~ 43893808 (-) True G28900
TU36196 lncRNA upstream 701683 43894179 ~ 43895951 (-) True G28907
TU36208 lncRNA upstream 803622 43996118 ~ 44000866 (-) True G28914
TU36272 lncRNA upstream 1294714 44487210 ~ 44487419 (-) True G28973
AMCG00008126 mRNA downstream 34405 43133750 ~ 43143331 (-) True AMCG00008126
AMCG00008123 mRNA downstream 46056 43125754 ~ 43131680 (-) True AMCG00008123
AMCG00008124 mRNA downstream 57572 43097111 ~ 43120164 (-) True AMCG00008124
AMCG00008125 mRNA downstream 94054 43062834 ~ 43083682 (-) True AMCG00008125
AMCG00008122 mRNA downstream 134106 43039398 ~ 43043630 (-) True AMCG00008122
AMCG00008131 mRNA upstream 12962 43205458 ~ 43210346 (-) True AMCG00008131
AMCG00008134 mRNA upstream 40737 43233233 ~ 43244258 (-) True AMCG00008134
AMCG00008133 mRNA upstream 76521 43269017 ~ 43270574 (-) True AMCG00008133
AMCG00008138 mRNA upstream 157603 43350099 ~ 43350744 (-) True AMCG00008138
AMCG00008137 mRNA upstream 175024 43367520 ~ 43381863 (-) True AMCG00008137
TU35782 other downstream 413082 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 1327846 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 1975911 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 2160488 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 3673144 39500321 ~ 39504592 (-) True G27861
TU36269 other upstream 1225378 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 2858199 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 3288450 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 4521438 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 4931429 48123925 ~ 48124682 (-) True G29544

Expression Profile