RNA id: AMCG00008130



Basic Information


Item Value
RNA id AMCG00008130
length 669
RNA type mRNA
GC content 0.52
exon number 7
gene id AMCG00008130
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43232310 ~ 43251526 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAGTTATTGGCTCAGAGCAGCCACTACCTTACACAGGTATCACAGATTGGAACAGAACTGAATTCCCATGTTAGAGCGTTAGGCAACAGGCTCACCCAGGTCGTGACACAGGCCTGCGATCTGCACACACAGCATGTCTCTCTGGGTGATGTTGAGCTCCGGCTGTCGCTCATGCAGCGCCTGGACCAGCCTTCCAGCCAGGACGGGGACTTTATTGCCCCGGAGCTGACTACTCTGAAAGTCAACTGGATTTGtaatgatgacgatgatgatgacaatGGAAAGGGAGGAAGATCCATGAATGGATTCTCCGTTCTCCTTCTTGACCTGGGTCTAGCTCTGGAGTTAACGGGTAACAATATCTACGGTGAAGACATCTGCCAGGTGCTGGAAAGTGTCAAAGAAAACTCAGAGAGGTGCGCCTACATTCTGATGGACAAAATCCGGCCTCAGCCAGTGAGGAACTACCTGTTGAGATCAGGAAGCCCACTGAAGCTCAGCACCTGCCTGAGTGAGCTGGGCATGTTCGGAGCCTACGTCAGGCAGGGGAAGGGCATGGTGCTGAATGAGTGTACAGGACATCTCCTGAGGACCAAGAGTGCTGAACACTCAGATGGGGGGTTGACAACCGGTGTGGCAGTGCTGGACAACCCTCTCCTCATCTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU35900 lncRNA upstream 31107 43177802 ~ 43201203 (+) True G28678
TU35847 lncRNA upstream 111529 43109050 ~ 43120781 (+) True G28637
TU35743 lncRNA upstream 610153 42621950 ~ 42622157 (+) True G28548
TU35721 lncRNA upstream 645642 42584232 ~ 42586668 (+) True G28527
TU35705 lncRNA upstream 731329 42500674 ~ 42500981 (+) True G28511
TU36139 lncRNA downstream 642583 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA downstream 642659 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA downstream 642659 43894185 ~ 43895128 (+) False G28862
TU36226 lncRNA downstream 802439 44053965 ~ 44056608 (+) True G28931
TU36252 lncRNA downstream 1440015 44691541 ~ 44749908 (+) True G28956
AMCG00008127 mRNA upstream 9184 43219099 ~ 43223126 (+) True AMCG00008127
AMCG00008121 mRNA upstream 57184 43159569 ~ 43175126 (+) True AMCG00008121
AMCG00008120 mRNA upstream 76238 43144805 ~ 43156072 (+) True AMCG00008120
AMCG00008116 mRNA upstream 176625 43052668 ~ 43055685 (+) True AMCG00008116
AMCG00008119 mRNA upstream 213859 43012508 ~ 43018451 (+) True AMCG00008119
AMCG00008128 mRNA downstream 1071 43252597 ~ 43259195 (+) True AMCG00008128
AMCG00008132 mRNA downstream 41143 43292669 ~ 43305530 (+) True AMCG00008132
AMCG00008141 mRNA downstream 85415 43336941 ~ 43338038 (+) True AMCG00008141
AMCG00008143 mRNA downstream 140578 43392104 ~ 43410731 (+) True AMCG00008143
AMCG00008142 mRNA downstream 220124 43471650 ~ 43494202 (+) True AMCG00008142
TU35886 other upstream 83267 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 124068 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 1238933 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 2985072 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 3172924 40056632 ~ 40059386 (+) True G27974
TU35919 other downstream 41070 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 1771622 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 1897903 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 2089070 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 2188987 45440513 ~ 45441064 (+) True G29183

Expression Profile