RNA id: TU35919



Basic Information


Item Value
RNA id TU35919
length 477
RNA type TUCP
GC content 0.49
exon number 4
gene id AMCG00008132
representative False

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43292596 ~ 43305530 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AATGAAGTAATGTGTTGCCCTCATGGATCAATGCTTTTAATgcaggtgtatgtgtgtgcctgtATCTTTGCAGACCCGTTCTCTCCTGATGGCGTCAGTCCCTGAGCATGTGTTGATGAATGAAGCACTGATAGAAGATCTGCAGAAGGTGGCTAAGGACACTGCCCTGCTTCAGGGGGTCCTGATGAGGACCAAGGAGACTCCCAATTCCTCAGAGGTTGTCAGCTATGCTCCGTTCACACTCTTCCCCTCTCCAGTACCCCGGTCTCTGTTCGAGCAGGCCCGCCAGGTCCAGACACACTTCAATCTGCTGGTGGACAGAATCAGCCAAGATGCAGAGTTCCTAGAGCAAGCACTAGCCAGCACAATCAAAGTAGATGACTTCACAGCAAAactgttcaacatctacagACAGGTTAAACAAGAGGGCTGTTCACAGCATATAGTTTTGGGTTTGAACCGCTCAGACTACATGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU35900 lncRNA upstream 91393 43177802 ~ 43201203 (+) True G28678
TU35847 lncRNA upstream 171815 43109050 ~ 43120781 (+) True G28637
TU35743 lncRNA upstream 670439 42621950 ~ 42622157 (+) True G28548
TU35721 lncRNA upstream 705928 42584232 ~ 42586668 (+) True G28527
TU35705 lncRNA upstream 791615 42500674 ~ 42500981 (+) True G28511
TU36139 lncRNA downstream 592687 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA downstream 592763 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA downstream 592763 43894185 ~ 43895128 (+) False G28862
TU36226 lncRNA downstream 752543 44053965 ~ 44056608 (+) True G28931
TU36252 lncRNA downstream 1390119 44691541 ~ 44749908 (+) True G28956
AMCG00008128 mRNA upstream 33401 43252597 ~ 43259195 (+) True AMCG00008128
AMCG00008130 mRNA upstream 41070 43232310 ~ 43251526 (+) True AMCG00008130
AMCG00008127 mRNA upstream 69470 43219099 ~ 43223126 (+) True AMCG00008127
AMCG00008121 mRNA upstream 117470 43159569 ~ 43175126 (+) True AMCG00008121
AMCG00008120 mRNA upstream 136524 43144805 ~ 43156072 (+) True AMCG00008120
AMCG00008141 mRNA downstream 35519 43336941 ~ 43338038 (+) True AMCG00008141
AMCG00008143 mRNA downstream 90682 43392104 ~ 43410731 (+) True AMCG00008143
AMCG00008142 mRNA downstream 170228 43471650 ~ 43494202 (+) True AMCG00008142
AMCG00008140 mRNA downstream 195866 43497288 ~ 43507053 (+) True AMCG00008140
AMCG00008146 mRNA downstream 303835 43605257 ~ 43621143 (+) True AMCG00008146
TU35886 other upstream 143553 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 184354 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 1299219 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 3045358 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 3233210 40056632 ~ 40059386 (+) True G27974
TU36366 other downstream 1721726 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 1848007 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 2039174 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 2139091 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 2966469 46267891 ~ 46268327 (+) True G29353

Expression Profile