RNA id: AMCG00008134


Basic Information

Item Value
RNA id AMCG00008134
length 1542
RNA type mRNA
GC content 0.46
exon number 15
gene id AMCG00008134
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43233233 ~ 43244258 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATCTCATTACTTCTGAACAGCATACGGACGAAGCTGGTGACATGGAAGTGGAGATGAAAGTATTTAATGATCCCATTCATGGTCACATTGCTTTGCCCGAGTTGCTAGTCCAGTTCATCGACACCCCGCAGTTCCAGAGACTGCGCTACATCAAGCAGCTGGGCGGAGCCTATTTTGTGTTTCCTGGAGCCTCACACAACCGCTTTGAGCACTCCATAGGGGTGGGGTACCTGGCTGGAAGGCTGGTCCAGGCGCTGCATGAGCGACAGCCGGAGCTCAACATCACCCAGAGAGACATGCTGTGTGTGCAGATCGCAGGCCTGTGTCACGACCTGGGACATGGACCCTTTTCTCACATGTTTGATGCAAACTTCATGAAGAAAGCCATTCCAGGTTCTACATGGAAGcATGAGGAGGCCTCCATCTGTATGTTAGATCACCTGATCAGGCAAAATAATCTTGAGAATGAAATGGTGGCAGCAGGCCTGGTTCTTCCTGAAGACCTGGTTTTCATCAAAGAACTGATAGACATTAATGCAGCACAGCATGTGGAAAATAATGGGGCTAGAGACGCTGAAGTAAATGGAGATCGGAGAATCAACAAGCCCTTCCTGTATGAGATTGTGTCCAACAAGAGAAATGGCATTGATGTAGACAAGTGGGATTATTTTGCCAGGGATTGCTCTTACCTGGGGATGGCAAACAACTTTGACTACAATCGCCTTCTGAAGTTTGCTCGTGTTTGTactgtacaagaaaaaaaacaaatctgcttcAGAGATAAGGAGAAGGGAAATTTGTATGACTTCTTTTACATGCGAAACTGCATTCACCGCAGAGCCTGTCAGCACAGGGTTGTGAAGATCGTTGAGGAAATGATATCAGAAGCTTTCTTGCAGGCTGATGGagtaattgaaataaaaggCTCTGAAGAAAGCACTTTCAGGATCTCCACTGCAAAAGATGATATGGAGGCCTACACAAAGCTGACAGATGTGATGTTTCAAAAGATACTGTACTACCCAATTCCTGAAGAGAATGCCCAAAATATAATGAATGCCCAGAATATCCTCAGAAATGTAATGCGCCATAAATTCTACATGTTTGCGCATGAAACAAAACCCTTCTGTTCAAAAATGaGTGAAGAAGAGATTACTGATCAGGTTGTGATATTCATAACTGAGAGAATCCTCATCAATCAGgatcCGCTCGATGTGACGAAAGTCATTGTTCAAGTTGTTACCATGAACTATGGTATGAAGGTAAATAACCCCATTGATGGGGTTAACTTCTACAGCAAAACTAACCCCAATGAAGCCCACCTAATTACTAGAGAAGAGGTGTCTCTTTTCCTACCTAACATGTTTGAAGAGAAACTGGTACGTGtttattacaagaaaataaaaggagaggaggcagagggcCCGGAGGAGGCAGAGGGCCCGGAGGAGGCAGAGGGCCCGGAGGAGGCAGAGGGCCCGGAGGAGGCAGAGGGCCCGGAGGAGGGAGAGCGATTAAGGgaTGTAAACCTGGACTAA

Function

GO:

id name namespace
GO:0045088 regulation of innate immune response biological_process
GO:0051607 defense response to virus biological_process
GO:0005634 nucleus cellular_component
GO:0003723 RNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K06885 K06885; uncharacterized protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35870 lncRNA downstream 134760 43097198 ~ 43098473 (-) False AMCG00008124
TU35727 lncRNA downstream 638373 42522805 ~ 42594860 (-) True G28532
TU35706 lncRNA downstream 732237 42500677 ~ 42500996 (-) True G28512
TU35703 lncRNA downstream 756243 42475720 ~ 42476990 (-) True G28509
TU35673 lncRNA downstream 832159 42360908 ~ 42401074 (-) False AMCG00008104
TU36079 lncRNA upstream 266502 43510760 ~ 43583413 (-) False AMCG00008144
TU36187 lncRNA upstream 619349 43863607 ~ 43893808 (-) True G28900
TU36196 lncRNA upstream 649921 43894179 ~ 43895951 (-) True G28907
TU36208 lncRNA upstream 751860 43996118 ~ 44000866 (-) True G28914
TU36272 lncRNA upstream 1242952 44487210 ~ 44487419 (-) True G28973
AMCG00008131 mRNA downstream 22887 43205458 ~ 43210346 (-) True AMCG00008131
AMCG00008129 mRNA downstream 40737 43177736 ~ 43192496 (-) True AMCG00008129
AMCG00008126 mRNA downstream 89902 43133750 ~ 43143331 (-) True AMCG00008126
AMCG00008123 mRNA downstream 101553 43125754 ~ 43131680 (-) True AMCG00008123
AMCG00008124 mRNA downstream 113069 43097111 ~ 43120164 (-) True AMCG00008124
AMCG00008133 mRNA upstream 24759 43269017 ~ 43270574 (-) True AMCG00008133
AMCG00008138 mRNA upstream 105841 43350099 ~ 43350744 (-) True AMCG00008138
AMCG00008137 mRNA upstream 123262 43367520 ~ 43381863 (-) True AMCG00008137
AMCG00008139 mRNA upstream 152332 43396590 ~ 43408933 (-) True AMCG00008139
AMCG00008136 mRNA upstream 166951 43411209 ~ 43432086 (-) True AMCG00008136
TU35782 other downstream 468579 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 1383343 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 2031408 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 2215985 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 3728641 39500321 ~ 39504592 (-) True G27861
TU36269 other upstream 1173616 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 2806437 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 3236688 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 4469676 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 4879667 48123925 ~ 48124682 (-) True G29544

Expression Profile