RNA id: AMCG00008138


Basic Information

Item Value
RNA id AMCG00008138
length 330
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00008138
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43350099 ~ 43350744 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAATTAATGTAGATGACTTCACAGCGAGactgttcaacatctacagACAGGTTATACAAGAGGGCTGTTCACAGCCTATAATTTTGGGTTTGAACCGCTCAGACTACATGTTTGACCTTGGGAAAGGTTGCAAAACATCCTTAAAGCAGATTGAGATTAATACTATAGCTGCCAGTTTGGGAGGGCTTACCTCACGGACTCCAGCTGTTCATAGACATATCCTGAAGGTCGCAGGTCGAGTCGAGGAACAGATGAAAATCCTGGACAATAACCCAGCAGCAGGGTCTGCCAAGGCCATCGCCAAAGCCTGGGAGCTGTATGGCTCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35870 lncRNA downstream 251626 43097198 ~ 43098473 (-) False AMCG00008124
TU35727 lncRNA downstream 755239 42522805 ~ 42594860 (-) True G28532
TU35706 lncRNA downstream 849103 42500677 ~ 42500996 (-) True G28512
TU35703 lncRNA downstream 873109 42475720 ~ 42476990 (-) True G28509
TU35673 lncRNA downstream 949025 42360908 ~ 42401074 (-) False AMCG00008104
TU36079 lncRNA upstream 160016 43510760 ~ 43583413 (-) False AMCG00008144
TU36187 lncRNA upstream 512863 43863607 ~ 43893808 (-) True G28900
TU36196 lncRNA upstream 543435 43894179 ~ 43895951 (-) True G28907
TU36208 lncRNA upstream 645374 43996118 ~ 44000866 (-) True G28914
TU36272 lncRNA upstream 1136466 44487210 ~ 44487419 (-) True G28973
AMCG00008133 mRNA downstream 79525 43269017 ~ 43270574 (-) True AMCG00008133
AMCG00008134 mRNA downstream 105841 43233233 ~ 43244258 (-) True AMCG00008134
AMCG00008131 mRNA downstream 139753 43205458 ~ 43210346 (-) True AMCG00008131
AMCG00008129 mRNA downstream 157603 43177736 ~ 43192496 (-) True AMCG00008129
AMCG00008126 mRNA downstream 206768 43133750 ~ 43143331 (-) True AMCG00008126
AMCG00008137 mRNA upstream 16776 43367520 ~ 43381863 (-) True AMCG00008137
AMCG00008139 mRNA upstream 45846 43396590 ~ 43408933 (-) True AMCG00008139
AMCG00008136 mRNA upstream 60465 43411209 ~ 43432086 (-) True AMCG00008136
AMCG00008135 mRNA upstream 81932 43432676 ~ 43440066 (-) True AMCG00008135
AMCG00008144 mRNA upstream 162117 43512861 ~ 43530087 (-) True AMCG00008144
TU35782 other downstream 585445 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 1500209 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 2148274 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 2332851 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 3845507 39500321 ~ 39504592 (-) True G27861
TU36269 other upstream 1067130 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 2699951 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 3130202 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 4363190 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 4773181 48123925 ~ 48124682 (-) True G29544

Expression Profile