RNA id: AMCG00008139


Basic Information

Item Value
RNA id AMCG00008139
length 1782
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00008139
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43396590 ~ 43408933 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTTCTTGGCTTTCTCCTCAGCATTGCGACACTCCTGCACagcctcctccacctccccggAGAGCTGGGAAATCTCGTGCTCGGCCAGCTTGCGTGCACGGTCGGTCTGCTCCAGGAGGCTGCGCAGCTCCTCCACCTCTGCTGCCAGGAGGTTGGTCCTACGCTCGATCACCGCCATCTGCTCCTTCAGGGATGCGACTTATGATGAAATCCTTCTCCTCTCTGTGGCTGCCCTCACTGACCTTGACCTGAGCCTGGAGCTGACGGACCAGTTTCTGCATCTCCGCCGCCTGCCTGTTGGCGTGATTCAGCTGGATCTCCATCTCATTCAGGTCGCCCTCCATCTTTTTCTTCAGCCTGACGGCTTCATTGCGAGACTTGGCCTCGGCATCCAGAGTGGCCTGCATGGACTCCACGGCACGTTGGTGGTTACGCCTGCGTTCTTCAGTTTGAAGAGCTCGGTGCTCAGGCTCCGGGACTCCTTCTGGGACGACTCCAGCTCGGACTGCGTCTCCTCATACTTCTGCTTCCACTCGGATAGCACCTTGTCGAAGTTGCGCTGCTTCTTGTCCAGAGCCGCAGCGGCAGAGTTGGCTCTCTCTAGGTCGATCACCAGGTCTTCGATCTCCGTCTGCAGCCGGTGTTTGGTCTTTTCTAGGGAGGAGCACTTGGCGTTCGAAGCCTCCACTGCTTCCTCTGCCTCTTGCAGCCGAGATGCCAGCTTCTTCCTGCAGGCAGGGCATCATTGTCACGATCaTCCTCTGGATGGCATCAGTCTCATATTTGGTCCTCCACTGTGCCACCTCCGCGTTGCCCTTGGAGAGCGCGCGCTGCAACTCGGACTTGGCCTCCTGCTCTTCTTCAAACTGTTCCCTCAGCAGGTCGCAGTCATGACTCTCCTCGTCCAGCTGTTTCTTCAGCTCCTCCACAGCGTGAGTGAAGGACATCTTACTGCGGCTCAGCTGCATGACCAGGGCTTCACGTTCTTCGAGCTTCCTGGACAGCTCACCTGCACAGAGCAACGGAGAGGAGAAATACTGGTCCTCATTATAAGACACTTGCCACTCTCTGCCTGCGCTTTGGCCCGCTGGGACGAGGCTTCGTTAAGCTTCTGCTTGACCCTCTGCAGGCTCTCGATCTGCTCGCTAAGCTCGGCCACGCTGTCGGCGTGCTTTTTGCGCAGGGCGGCGGCCGTGGACTCGTGGTGCAGCATGGCCTCCTCCAGGTCCCGCCGCAGCTTGAGGAACTCCGCCTCACGCTTCTTGTTCATCTCGATCTGGGCCGTGGTGGCCCCGCCAGCCTCCTCCAGACGCTCACTCAACTCCTCCAGCTCCCGGGCCACCTCCGAGCGCTGCTTCTCCACCTTGGCCCGCACGGCCCGCTCAGCCTCCAACTCCTCCTCCAACTCCTCGATTCGTGCCTGGTTTTTGTTGGGAGTGGTGGTGGAGGGAGATCATTATATTTGtttctcctccagctccttccTCTTGGCCTCAGACTTCTCCAGGGCCTCCTTCAGTTTCAGGAACTCCTCCTTCATGGTGGCCATCTCCTTCTCTGTGGCTGCACTCCTCAAGAGTGGCTTGATCTTGAAGAACAGTTTCATCCAAGGCCAGTGCTTCACAGCATTGAAGGCCCGGATATTCCACTGGATAATCATGAGAGCCTCCCTGGGACAGGAAAGTTGTCAGATACTCACAAAACGAGAGGAGTTGTCATTCCTCAAGGTTTTGGCGTTACCAAAGGCTTCCATGGCAGGGTTAGCCTCTATGATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35870 lncRNA downstream 298117 43097198 ~ 43098473 (-) False AMCG00008124
TU35727 lncRNA downstream 801730 42522805 ~ 42594860 (-) True G28532
TU35706 lncRNA downstream 895594 42500677 ~ 42500996 (-) True G28512
TU35703 lncRNA downstream 919600 42475720 ~ 42476990 (-) True G28509
TU35673 lncRNA downstream 995516 42360908 ~ 42401074 (-) False AMCG00008104
TU36079 lncRNA upstream 101827 43510760 ~ 43583413 (-) False AMCG00008144
TU36187 lncRNA upstream 454674 43863607 ~ 43893808 (-) True G28900
TU36196 lncRNA upstream 485246 43894179 ~ 43895951 (-) True G28907
TU36208 lncRNA upstream 587185 43996118 ~ 44000866 (-) True G28914
TU36272 lncRNA upstream 1078277 44487210 ~ 44487419 (-) True G28973
AMCG00008137 mRNA downstream 14727 43367520 ~ 43381863 (-) True AMCG00008137
AMCG00008138 mRNA downstream 45846 43350099 ~ 43350744 (-) True AMCG00008138
AMCG00008133 mRNA downstream 126016 43269017 ~ 43270574 (-) True AMCG00008133
AMCG00008134 mRNA downstream 152332 43233233 ~ 43244258 (-) True AMCG00008134
AMCG00008131 mRNA downstream 186244 43205458 ~ 43210346 (-) True AMCG00008131
AMCG00008136 mRNA upstream 2276 43411209 ~ 43432086 (-) True AMCG00008136
AMCG00008135 mRNA upstream 23743 43432676 ~ 43440066 (-) True AMCG00008135
AMCG00008144 mRNA upstream 103928 43512861 ~ 43530087 (-) True AMCG00008144
AMCG00008147 mRNA upstream 124626 43533559 ~ 43556033 (-) True AMCG00008147
AMCG00008148 mRNA upstream 257635 43666568 ~ 43676377 (-) True AMCG00008148
TU35782 other downstream 631936 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 1546700 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 2194765 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 2379342 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 3891998 39500321 ~ 39504592 (-) True G27861
TU36269 other upstream 1008941 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 2641762 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 3072013 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 4305001 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 4714992 48123925 ~ 48124682 (-) True G29544

Expression Profile