RNA id: AMCG00008140


Basic Information

Item Value
RNA id AMCG00008140
length 2720
RNA type mRNA
GC content 0.44
exon number 8
gene id AMCG00008140
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43497288 ~ 43507053 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGTCCTCTACATGCCTCTGTTATTTCACGTCATCTCACACCTGCACAATGCACTGCAAAGGATTAATTAAGAGGTGTATGTGAGCCTTCACACAGTACCAGACGACGAATGGAAGAGACTGgagcccacacacacacaaccacacacacgcacacaaggACAGGATCATTGTAGCAGCAGCCTCTATTTCACTCACATCTCTTTAAAGAGCAATTAACGAAAAGGAGTATCCTTTTTGCCAACAAGAGGTGGTAGCCAACTGAGAGACAGCAAAAGTATACAATGAGAACGAGCTGGTGAGACAGTTTTAAGGAACCCACTTAGACCCGATTGAAATGGGGAGCCGCCCTAGCAAAGGCCGACGCAACTCTTCCCAGCAGCCGAGTGTAACTAGACAGCCTGACACCCCTCAGCCAACTTTCGCTGATCTCAGCAAATATGTGGTGGTGTCCCTGTACAACTATCCAGCTGGGGGCCCTGGGGACTGCAGCATTCGAGTTGGGGAGCGACTCAACGTCCTAACAGAGGATGGCGACTGGTGGAAGGTGAGCTCCACAGCCACGGGAATAGAAAGCCACATCCCCAGCAACTACACTGCCAAAGTGTATCACAGGTGGCTATTTGAAGGCATCAGCCGGGAGAAAGCCGAAGAGCTGTTGCTGTTACCCTACAACCAGGCCGGCTCCTTCATGATCCGCGAGAGTCAGACGCGGAGAGgagGCTATTCCCTATCCGTGCGGAGGAACACCAGCTCCTCCTGGGAGTCTGTGAAACACTATCGCATCCATCGCTTACACAACGGCTGGTTCTACGTCTCCCCCCGGCTGACCTTCCCCTCGCTCATCCAGCTGGTGGATCATTATTCTGAGGTGAGTGAGGGTCTGTGCTGCCTCCTGAGGGAGCCTTGCTTCATTCAGGGCTCCAACAATGTCCCAGTCTTGAGCGGACCCCCACCGATGGCAGTCAGAAAGCCCACCCTCAACTGGAAAGATGTGGACAGCTCCATGCTGTTCAGTACAGACAAAGCGGAGTCAGGAGAGCCATTGGTGAGCGAGGGGCTTCGGGAGGCAATAAACTCCTACCTGTACATGACGGAGGAGCTTGACTGTGAGTCTTGCGGCAAGGGCTGGAAGACTTGAAACTAAAAGACGCCAGAAACCAGGGAAGAGACCTCGGGGATGAGCAACAGCACCAAAGACTGTCTCCTGTTGAGTCCTCTGACATTCTCCATTTgggattgttttttgtaattatttatcttCACTGCCTGGTGCAGTTTTATCTGACACTGAttttaacaaaatcaaactATCCTCCCGAGTGGAGCAGGACCATACTGTAACTGTGGTCCACGGAATGGCTGCACTCCCACCACCACGGGTCCCAGGGACACAAGGACAGTGGGAGATTGAGACGGGAGGCCCTCATTAACTTCCTCTCATTGTCGTTCTTCGTCAATGTAACTGACACCTTCACAAAGACAGGTGCTTTGATGCAGCTCGCATAGTGCAGGTTGAAATCAAGTGAAAAACAAGGAAGATTTATGACAAACTACAACACACAGGATCTGAAGCTGGGGAACCCTTCTGTTTGTAGACAGCGTTTGGCGATCACACAGGAGGATCTCATGACATTGCATCCCACACATGGACCACCCAGAGCGACCCATAAGTACATGCATCTGTCTTCCACCTTACAATATCTTATCAGTTGCTATTACAATTGGGTTGGGActtctatttatgttttatcttCTTAATACcgtttcattttacttttttatgcaCAGTGTAGAAGCGGTCCGACgattgaactttttttttctctccatttgcTTCGTGCCAACTGAGTATTTTCCATCGCAGTTTCCACTTCAGTcgaacactttatttttttattttccataatagAAGTTAGGAGAAAACGAATTGATTGCTGATAgccatgaaattaaaatatgaaaaaaaatcaaccaaaatcatttttttgcCCTGTtgtttaagaaataaacaatgcaagAGAGTTGTTAAaccattattatatattattattattattattattattattaaaaggacagcaaaaaaataaaatagctacCAAAGGAGATATTTGGTTATACTTCTCAAAAAAGTGagaatttgtaatttgcatattatgatcaataaatgtatgcattataaaCAATGTCAGACTTGTTGGGTTGtaatgaacaaaacaattgGGTTATTTTAAGCAATGTACTCATTTATTCAAGGTGACGCATGTGTTTGTTCTTAAAGTCTAGctaaggggagggggggtagaTGGACACAGGACGTGGTGGCTAAGTTGTGGCCATGGTATAGAAAGGCTGATGACACTTTTGTGTACTGAGACCTTGGTTTCAGCAACACCAGATCGATATAACAGATCGAGattaataaatgtttatgaaaacaacaacacaagtttGGACGCAAGTGTTTTGAGTTACCCAGATTATTTAAGCGTCTTTGTAGTgtaggagaaagaagaaaaaatactgtaGCACCATAGTAATCAGTGTGTATTGAAATGCTTACTctaaaattgtttttcattttcccccAAAGATGTGAAGTGGTTACGTTTTGCAATGCAGATTTTCAGCAGTTTCACAATCAAGgtcctgtttgtgtgtgccGTTTCATaacttgtaaataattaatacaaaataaattatttatggtGAATAGA

Function

GO: NA

KEGG:

id description
K23698 SLA; src-like-adapter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35900 lncRNA upstream 296085 43177802 ~ 43201203 (+) True G28678
TU35847 lncRNA upstream 376507 43109050 ~ 43120781 (+) True G28637
TU35743 lncRNA upstream 875131 42621950 ~ 42622157 (+) True G28548
TU35721 lncRNA upstream 910620 42584232 ~ 42586668 (+) True G28527
TU35705 lncRNA upstream 996307 42500674 ~ 42500981 (+) True G28511
TU36139 lncRNA downstream 387056 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA downstream 387132 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA downstream 387132 43894185 ~ 43895128 (+) False G28862
TU36226 lncRNA downstream 546912 44053965 ~ 44056608 (+) True G28931
TU36252 lncRNA downstream 1184488 44691541 ~ 44749908 (+) True G28956
AMCG00008142 mRNA upstream 3086 43471650 ~ 43494202 (+) True AMCG00008142
AMCG00008143 mRNA upstream 86557 43392104 ~ 43410731 (+) True AMCG00008143
AMCG00008141 mRNA upstream 159250 43336941 ~ 43338038 (+) True AMCG00008141
AMCG00008132 mRNA upstream 191758 43292669 ~ 43305530 (+) True AMCG00008132
AMCG00008128 mRNA upstream 238093 43252597 ~ 43259195 (+) True AMCG00008128
AMCG00008146 mRNA downstream 98204 43605257 ~ 43621143 (+) True AMCG00008146
AMCG00008145 mRNA downstream 155511 43662564 ~ 43663708 (+) True AMCG00008145
AMCG00008150 mRNA downstream 171062 43678115 ~ 43695564 (+) True AMCG00008150
AMCG00008149 mRNA downstream 346972 43854025 ~ 43893098 (+) True AMCG00008149
AMCG00008154 mRNA downstream 469248 43976301 ~ 43999833 (+) True AMCG00008154
TU35919 other upstream 195866 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 348245 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 389046 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 1503911 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 3250050 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 1516095 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 1642376 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 1833543 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 1933460 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 2760838 46267891 ~ 46268327 (+) True G29353

Expression Profile