RNA id: AMCG00008141



Basic Information


Item Value
RNA id AMCG00008141
length 369
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00008141
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43336941 ~ 43338038 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCCATAGCTAACCCAGACCACTTTGTCTTAAAGCCCCAGCGAGAAGGAGGAGGTAACAATATCTACGGTGAAGACATCTGCCAGGTGCTGGACAGTGTCAAAGAAAACTCAGAGAGGTGCGCCTACATTCTGATTGACAAAATCCGGCCTCAGCCAGTGAGGAACTACCTGTTGAGGTCAGTAAGCCCACTGAAGCTCAGCACCTGCCTGAGTGAGCTGGGCATGTTCGGAGCCTACGTCAGGCAGGGGAAGGGCATGGTGCTGAATGAGTGTACAGGACATCTCCTGAGGACCAAGAGTGCTGAACACTCGGATGGGGGTTTTATATCTGGTGTGGCAGTGCTGGACAACCCCCTCCTAGTCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU35900 lncRNA upstream 135738 43177802 ~ 43201203 (+) True G28678
TU35847 lncRNA upstream 216160 43109050 ~ 43120781 (+) True G28637
TU35743 lncRNA upstream 714784 42621950 ~ 42622157 (+) True G28548
TU35721 lncRNA upstream 750273 42584232 ~ 42586668 (+) True G28527
TU35705 lncRNA upstream 835960 42500674 ~ 42500981 (+) True G28511
TU36139 lncRNA downstream 556071 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA downstream 556147 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA downstream 556147 43894185 ~ 43895128 (+) False G28862
TU36226 lncRNA downstream 715927 44053965 ~ 44056608 (+) True G28931
TU36252 lncRNA downstream 1353503 44691541 ~ 44749908 (+) True G28956
AMCG00008132 mRNA upstream 31411 43292669 ~ 43305530 (+) True AMCG00008132
AMCG00008128 mRNA upstream 77746 43252597 ~ 43259195 (+) True AMCG00008128
AMCG00008130 mRNA upstream 85415 43232310 ~ 43251526 (+) True AMCG00008130
AMCG00008127 mRNA upstream 113815 43219099 ~ 43223126 (+) True AMCG00008127
AMCG00008121 mRNA upstream 161815 43159569 ~ 43175126 (+) True AMCG00008121
AMCG00008143 mRNA downstream 54066 43392104 ~ 43410731 (+) True AMCG00008143
AMCG00008142 mRNA downstream 133612 43471650 ~ 43494202 (+) True AMCG00008142
AMCG00008140 mRNA downstream 159250 43497288 ~ 43507053 (+) True AMCG00008140
AMCG00008146 mRNA downstream 267219 43605257 ~ 43621143 (+) True AMCG00008146
AMCG00008145 mRNA downstream 324526 43662564 ~ 43663708 (+) True AMCG00008145
TU35919 other upstream 35519 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 187898 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 228699 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 1343564 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 3089703 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 1685110 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 1811391 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 2002558 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 2102475 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 2929853 46267891 ~ 46268327 (+) True G29353

Expression Profile