RNA id: AMCG00008142


Basic Information

Item Value
RNA id AMCG00008142
length 3370
RNA type mRNA
GC content 0.45
exon number 14
gene id AMCG00008142
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43471650 ~ 43494202 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTAAATCCAATTAGAGCAGCACACAGTCCAGACAGCCCCTGGACGCATTGTGCTTACCAAGTGGGAATtgcagtttctctctctttctcgcgCTGCACCTCTCTCTGGCTCGCTagttggctggctggctggctgactctctctctcgctctcttacTCACTCTGCTCTCTCGCACTCTCTCCTCCCATCTCCTGGAGGGACACACTGCTGGGAACTCACTAGTTTTATTTCTCGGCTGACAGGGCAGATTTTGTTTCCAGGCTCCTTCCTCAGTGCAAGATGACAGCCGTTTTAGATCTAAATCCCATCGCATGTGCCGTAGTCGAAGTGGAGCATGACATCGAGACCCCACATGGCGTCCTCCATGTCACCCTGAGAGGCACTCCTAAGGGGAACAGACCCGTCATCCTCACCTACCATGACATTGGACTCAACCACAAGTCCTGCTTTAACACGCTCTTCAACTTCGAAGACATGCAGGAGATCACGCAGCACTTCGCAGTGGTCCATGTTGATGCCCCTGGACAGCAGGAGAATGCTCCTCCATTCCCTACCGGGTACCAATACCCCACTATGGATGAACTGGCTGAGATGCTGCCTTCGGTCTTACTGCACCTGAAGATAAGCAGTGTCATTGGGATCGGCGTGGGAGCCGGTGCCTACATTCTCACCAGACTTGCACTCAACCAGCCCGACCTGGTTGAAGGCCTGGTGCTCATCGATGTTGACCCGTGTGCGAAGGGCTGGATGGACTGGGCAGCTTCGAAGCTTTCCGGATGGACAAGCAGCCTGGTGGACATTGTCATGGCTCATCATTTCAGTCATGAGGAGCTTCAGGACAATCAGGAGCTGATCCAGACATACCGCCTGCACATTGCACAGGACATCAACCAGGACAACCTGAATCTCTTCTGCACTTCCTACAATGGccgTCGAGATCTGGAGATTGAGAGACCTGTAACTGGTCTGAATGAGGACACAGTTAGCACACTCAAATGCCCTGCGTTGCTGGTTGTTGGAGACACTTCTCCAGCAGTGGAAGCTGTGGTTGAGTGCAATTCTAGACTAAACCCTTCAAAAACAACCTTGTTGAAGATGGCGGACTGTGGAGGGTTGCCTCAAGTCGTCCAACCTGGCAAGCTAGCAGAGGCCTTCAAGTACTTTGTTCAGGGAATGGGCTACATGCCCACAGCAAGCATGACCCGTCTAGCCCGCTCTCGCGCACACTCCTCGTCCAGCGTGGGCTCCGGGGAGGGGAACCGCAGCCACTCCCTCACCAACAACCAGCTGGAGGGGGCGACCGCCGCAGCCGCCAACGACAACCAGGCTAGGCCTCAAACCATGGAGGTGTCCTGCTAAACGCACCGCTCTTTCCACTTGCCAGGCAGCCTGTcaccccctccctcttcctcctgtgtctccctcccttccctttCCCCGCTCAAAACCAGAGCAAGTCCTGTAACGAAccatattataaattatacatatatatatatatatatgtcacaagAGCAAGgggacaaaaagaaaaaaggttaacAGCTTATGATCCTCCACCAAGTATCCAGTTATTCTTTTTTTCTAGCAGTGTAAGCATGCATCCCTTGGAAATTCAGTCattgcttattttcttttttttctttttgttgatatcttttttctttgttttgcaaattgtatttattttttacagtgggTTGATCTTTGTTTTTTAGGCACCTAGGTGATGaggttttttttggggggggaagtGGAAAATGGCACAGCCATAACACACAAAGACACGCAAATGGATGATCAGTTCCCACCATCGCTGTCTTGTCCTTCAGCTGCATTCTTCCCTTGCAGTGTGCACACAATACAAAACCAGTCactcttttcccttttctgtgtgTGACTCTCCATCCTTCTCCTCTCCATCCCcagacactacacacacacacacacaatgtatttcttATCTTGTTGTCATTTGTGCGCATACAGTAATTCAGTGCTTCTCTTTCGATCTACTGTGACATCTTGTTCTAGTACAGTATCTTTATTTATGATGGATTTATAGCATGATTTAACATGAGAGTGTAGGAGCAAAATGCTGggattctgtgtgtgtatataaaaaactaaaataaataattacaaaataaataaaaagattgcTTCTGTTTAGGTGTCTCTGATTTGGGAGCGTCTAGTACCAAAGGAGGAAACCTGAGAGCTTACCAAACTTTGTGTTAAATCTACAGGTTTTCAAAAAAGTTGACTGAAATTCGCATCAAAAGCAGGAAACTAACATACAGTGAAGCCTGGGTTAAAAGGCATCAGCAATGGGAGAAACCAGAATTATTCTATCTAGGCCTTTAGTGGCAGAGTTGTTCCATTTGGATAAACTGGACACGTTCAATCACACTGTCTCGCATTAAAATCGTCCCGGTACTGCCTTTCAATGTGACAGAGGGCTTTTCACCTGTCTTGTTGTTTGCCTTTATTGAAGTGTACTGGTTCTTCACGTGGCTTCTCCACTCTAACTACATgagcaggagaaaaaaacactattacaataataatggaTAATAACATGTTGTGTCCAGACAAAACCTTTACGTTTTTAATGAACCCCCACATTAATGAACCGAAAGAGACAAACACaatgaatggggaaaaaaaaacattgtcccTGTGGGTTTGCATGCGGTTTACACGGGTTGCACTGCAGTAGCAAAGCTATGCACAGGATTTGCTTTGAGTGAAGGGGATATGTAGGTAGAAATTCAGCTATTCTTATGTACTTAAACCTAGACTGTTAGTAGAGCTTTCCTTACTAGGAGATGCAGGAAAGCCAACCTGCTGTTCTTGTCGTTTATTATGGGACCTTATACCTTGTAACATACAGGGCAGGGGTGTGgtaaatgggggaaaaaattgtCATCCGGAGAATTTAAtccattatatacatttttggtgTACGTTTTGAAGCTTtgcattgtaatgtttttaaagtcaGGACCGGAAACTGTACAGTGGTTACTTTTGTGTTgatgaaacctttttttttttttggacagttCCTTTTTAGGGTTTAACTGTGCTATCCTCCTCCGTATAAAGATATGGTCATCTCCTTCAGtacattttggtttggttttgttaattttcttaTGTAGTGGATACCAtagtacatttttcaattattgtttTCCCCCGAGTGGATATTCACTGCTGTTCCTGACTGGATTAAAGCCTGGGTGAGCTTGTGATGATGCTACACTGTTGTCTTCAAACAGGGAACATATAATTCTCACTGTCTGCTGATTATATCAATTTGTACTGATTATTAAATAAAGCTAGAAGTTGTAAATGAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35900 lncRNA upstream 270447 43177802 ~ 43201203 (+) True G28678
TU35847 lncRNA upstream 350869 43109050 ~ 43120781 (+) True G28637
TU35743 lncRNA upstream 849493 42621950 ~ 42622157 (+) True G28548
TU35721 lncRNA upstream 884982 42584232 ~ 42586668 (+) True G28527
TU35705 lncRNA upstream 970669 42500674 ~ 42500981 (+) True G28511
TU36139 lncRNA downstream 399907 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA downstream 399983 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA downstream 399983 43894185 ~ 43895128 (+) False G28862
TU36226 lncRNA downstream 559763 44053965 ~ 44056608 (+) True G28931
TU36252 lncRNA downstream 1197339 44691541 ~ 44749908 (+) True G28956
AMCG00008143 mRNA upstream 60919 43392104 ~ 43410731 (+) True AMCG00008143
AMCG00008141 mRNA upstream 133612 43336941 ~ 43338038 (+) True AMCG00008141
AMCG00008132 mRNA upstream 166120 43292669 ~ 43305530 (+) True AMCG00008132
AMCG00008128 mRNA upstream 212455 43252597 ~ 43259195 (+) True AMCG00008128
AMCG00008130 mRNA upstream 220124 43232310 ~ 43251526 (+) True AMCG00008130
AMCG00008140 mRNA downstream 3086 43497288 ~ 43507053 (+) True AMCG00008140
AMCG00008146 mRNA downstream 111055 43605257 ~ 43621143 (+) True AMCG00008146
AMCG00008145 mRNA downstream 168362 43662564 ~ 43663708 (+) True AMCG00008145
AMCG00008150 mRNA downstream 183913 43678115 ~ 43695564 (+) True AMCG00008150
AMCG00008149 mRNA downstream 359823 43854025 ~ 43893098 (+) True AMCG00008149
TU35919 other upstream 170228 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 322607 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 363408 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 1478273 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 3224412 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 1528946 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 1655227 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 1846394 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 1946311 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 2773689 46267891 ~ 46268327 (+) True G29353

Expression Profile