RNA id: AMCG00008143


Basic Information

Item Value
RNA id AMCG00008143
length 5059
RNA type mRNA
GC content 0.53
exon number 36
gene id AMCG00008143
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43392104 ~ 43410731 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTCCATTCCCTGGACACAATCTGATCAGTGTGTGCTGAGGATAGCTTGAAAACTCATTCCCAGTTCTGCGTCCTGCTGTGTCCAGTCGCAGTTTGATCACCATGTCTCACTTATTGGATATGACGGAGTTTGGAGAAGCTGCTGCCTTCCTTCGGAAGAGCGACAAGGAGATCATGGTCTTGCAGACAGTAGCTTTCGAcgGTAAGAAGAAGGCCTGGGTCCCGGATGAGAAAGAAGCCTATATCGAGGTGGAGATCAAGGAAATAAACGGTCTTAAAGCCATCGTGGAAACCAAAGATGGCAAGACCTTGACCGTGAAGGAGGATGACATCCAACAGATGAATCCCCCAAAGTTTGACATGATTGAGGACATGGCCATGCTAACCCACCTCAATGAAGCCTCCGTGCTGTACAACCTTAGGCGCCGCTACAGCAACTGGATGATCTATACGTACTCTGGGCTGTTCTGTGTGACCGTGAATCCCTACAAGTGGTTGCCTGTCTACACTAACCCTGTCGTTGCGGCCTACAAGGGCAAGCGTCGCTCAGAGGCTCCTCCCCACATCTACTCTATTGCCGACAATGCCTATAATGACATGTTGCGCAatcGTGAGAACCAGTCCATGCTCATCACTACTTTAAAGCaatatgattttaatGGCACCCTAGAAGATCAGATCATAGAGGCTAACCCTGCCATGGAAGCCTTTGGTAACGCCAAAACCTTGAGGAATGACAACTCCTCTCGTTTTGGTAAGTTCATCAGAATCCACTTCGGTCCCTCAGGGAAACTGGCTTCTGCTGACATCGATATCTATCTTCTGGAAAAATCCAGAGTGATCTTCCAGCAGCCAGGAGAACGGAGTTATCATATCTACTACCAGATCATGTCTCAGAAGAAACCAGAGCTTATGGATATGTTGCTGGTGTCCTCAAACCCCTACGACTATCACTTCTGCTCCCAAGGCGTGACCACTGTGGACAATCTGGATGATGGGCAGGAACTCATGGCCACCGATCATGCCATGGATATCCTGGGCTTCAGTGCTGATGAGAAGTATGGCTGCTATAAAATAGTCGGTGCCATCATGCACTTTGGAAACATGAAATTCAAGCAGAAGCAGCGTGAGGAGCAGGCGGAAGCTGACGGCACTGAAAGTGAGACAGTGAACTATGCAGTCGGTGCCCTGGCAAAAGCCACCTACGACCGCATGTTCAAATGGCTGGTGAGCCGGATCAACAAGACCCTGTACACGTCCCTGGCCCGGCAGTTCTTCATCGGTGTGCTGGACATTGCAGGCTTCGAAATCTTTGAAGTGCCTGCTGACCAGCCTAGGACAGCGACCAAGGAGAAGCGCAAGAAGGCTGCATCCTTCCAGACAGTCTCTCAGCTGCACAAGGAAAATCTGAATAAGCTGATGACAAACCTGCGCTCAACTCAGCCCCACTTTGTGCGCTGCATCATCCCCAATGAAACCAAGACTCCAGGTACATCTTCAGCACTAGTAGTCGTCTATCGCATCCTGAACCCCAATGCAATCCCTGATGACAAGTTTGTGGACAGCAGGAAAGCTGCAGAGAAGCTGCTAAGCTCCCTGGATATTGACCACAACCAGTACAGATTTGGACACACCAAGGTGTTCTTCAAAGCAGGTCTGCTGGGACAACTGGAGGAGATGAGAGATGAACGCCTGGCCAAGATCCTCACCATGATCCAAGCCATGGGCCGGGGCAGAATCATGAGAATAGAGTACCAGAAGATGATCGAAAGAAGGGAGGCTCTCATGATTATCCAGTGGAATATCCGGGCCTTCAATGCTGTGAAGCACTGGCCTTGGATGAAACTGTTCTTCAAGATCAAGCCACTCTTGAGGAGTGCAGCCACAGAGAAGGAGATGGCCACCATGAAGGAGGAGTTCCTGAAACTGAAGGAGGCCCTGGAGAAGTCTGAGGCCAAGAggaaggagctggaggagaaaCAAATCTGCATGATCCAGGAGAAGAACGACCTCTCACTGCAGCTCCAGGCTGAGCAGGACAATCTAGCCGATGCAGAGGATCGTTGCGACTTGCTGATCAAGGCCAAAATCCAACTGGAGGCCAAGGTGAAGAACCTGATCGAGGAAATGGCTGCATTAGATGAGACCATCCTTGAGGGTTCCCTGGAACAGGAGAAGAAAGTGCGAATGGACCTGGAGCGGGCCAAACGCAAGCTGGAGGGAGACCTCAAATTGTCTCTGGAGTCCATAATGGACCTAGAGAATGACAAGCAGCAACTGGAGGAGAAGCTCAAAAAGAAGGACTTTGAAATGAATCAAATCAGCTCAAAGATTGAAGATGAACAAGCCCTGGTGTTGCAGTTACAGAAGAAAATCAAGGAACTACAGGCACGAATCGAGGAGTTGGAGGAGGAGTTGGAGGCTGAGCGGGCCGTGCGGGCCAAGGTGGAGAAGCAGCGCTCGGAGGTGGCCCGGGAGCTGGAGGAGTTGAGTGAGCGTCTGGAGGAGGCTGGCGGGGCCACCACGGCCCAGATCGAGATGAACAAGAAGCGTGAGGCGGAGTTCCTCAAGCTGCGGCGGGACCTGGAGGAGGCCATGCTGCACCACGAGTCCACGGCCGCCGCCCTGCGCAAAAAGCACGCCGACAGCGTGGCCGAGCTTAGCGAGCAGATCGAGAGCCTGCAGAGGGTCAAGCAGAAGCTGGAGAAGGAAAAGAGTGAGACGAGGATGGAGGTGGATGACCTGAGCTCGAGCATGGAGCAGCTTACCAAGGGAAAGGCTAATGCTGAGAAGATGTGTAGGACTTATGAAGATCAGCTAAATGAATCTAAGGCTAAAGTGGAAGAGCTCCAGCGCCACCTTAACGAAGCCTCGTCCCAGCGGGCCAAAGCGCAGGCAGAGAGTGGCAAGTGTGAGCTGTCCAGGAAGCTCGAAGAACGTGAAGCCCTGGTCATGCAGCTGAGCCGCAGTAAGATGTCCTTCACTCACGCTGTGGAGGAGCTGAAGAAACAGCTGGACGAGGAGACTAAGGCGAAGAACGCCCTAGCACATGCCCTGCAGGCCTCACGTCATGACTGCGACCTGCTGAGGGAACAGTTTGAAGAAGAGCAGGAGGCCAAGTCCGAGTTGCAGCGCGCGCTCTCCAAGGGCAACGCGGAGGTGGCACAGTGGAGGACCAAATATGAGACTGATGCCATCCAGAGGACTGAAGAGCTAGAGGATGCTAAGAAGAAGCTGGCATCTCGGCTGCAAGAGGCAGAGGAAGCAGTGGAGGCTTCGAACGCCAAGTGCTCCTCCCTAGAAAAGACCAAACACCGGCTGCAGACGGAGATCGAAGACCTGGTGATCGACCTAGAGAGAGCCAACTCTGCCGCTGCGGCTCTGGACAAGAAGCAGCGCAACTTCGACAAGGTGCTATCCGAGTGGAAGCAGAAGTATGAGGAGACGCAGTCCGAGCTGGAGTCGTCCCAGAAGGAGTCCCGGAGCCTGAGCACCGAGCTCTTCAAACTGAAGAACGCCTACGAGGAGTCACTGGACCACTTGGAGACGCTCAAGCGAGAGAACAAGAACCTCCAAGagGAGATCTCTGATCTGACAGATCAGATCAGCCAAGGAGGGAAGACAATCCACGAGCTGGAGAAGGTGAAGAAAGTACTGGATGCAGAGAAGAATGATATCCAGGCTGCGTTGGAGGAGGCGGAGACCTTACGAATCCAGCTGGAACTGAATCAGATCAAAGCCGAGATTGACAGGAAGCTGGCAGAGAAAGATGAGGAGATTGACAACCTTAGGCGTAACCACCAACGTGCCGTGGAGTCCATGCAGGCCACTCTGGATGCCGAGGCCAAGTCTCGCAATGAAGCCGTCAGGCTGAAGAAAAAGATGGAGGGCGACCTGAATGAGATGGAGATCCAGCTGAATCACGCCAACAGGCAGGCGGCGGAGATGCAGAAACTGGTCCGTCAGCTCCAGGCTCAGGTCAAGGACCTGCACATTGAACTGGACGAGACAGTCCGCCTCAATGATGACCTGAAGGAGCAGATGGCGGTGATCGAGCGTAGGACCAACCTCCTGGCAGCAGAGGTGGAGGAGCTGCGCAGCCTCCTGGAGCAGACCGACCGTGCACGCAAGCTGGCCGAGCACGAGCTGCTGGAGTCCACGGAGAGAAATACAGGCCTGATTAACCAGAAGAAGAAGCTGGAGAGTGACATTTCCCAGCTCTccggggaggtggaggaggctGTGCAGGAGTGTCGCAATGCTGAGGAGAAAGCCAAGAAGGCCATAACTGATgctgcCATGATGGCAGAGGAGCTGAAGAAGGAGCAGGACACCAGTGCCCACCTAGAGCGCATGAAGAAGAACATGGACCAGACCATCAAGGACCTGCAGATGCGTCTGGATGAGGCCGAGCAGATTGCGCTCAAGGGTGGCAAGAAGCAGATCCAGAAACTGGAGAGCAGGGTGAGGGAACTGGAGAACGAGCTGGAGTGTGAGCAGAAGAAGAGTAACGAGTTCCAGAAAGGAGTTCGCAAGTACGAGAGAAGAATTAAAGAGCTCACCTACCAGACCGAAGAGGACAGGAAGAACATGCTTCGCCTGCAGGAGCTGATCGACAAACTCCAGACGAAGGTGAAGTGCTACAAGAGGCAGGCTGAGGAGGCGGAGGAGCAAGCAAACTCTAACCTGACCAAGTATAGGAAGGTCCAGCACGAACTGGACGACGCCGAGGAGAGGGCCGACATCGCCGAGACGCAGGTCAACAAGCTGCGCGTCCGCACCCGTGACCAGGGGAGCAAGGTAGGCAATACGAAACATCACCCAACCAGCTCATGACCACACCCTGTACTGGGCACAGCTGTGTGCAAAACTCTTGACTTTTTTATTGAAGGGGGTTATAGCTTTTAGGTGATAAAGCTTTCATTCTAATGATATTAATTCCATAACTTCTCTTAGTATTCATGAATTGAACTGATTGTTCTTTGTCTTTATTTCAGCTTgctgaatgaaaatgaatctTCCTCCAAAAGCCTGGCTGATGACACCGTCAACAAGCTGC

Function

GO: NA

KEGG:

id description
K17751 MYH6_7; myosin heavy chain 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35900 lncRNA upstream 190901 43177802 ~ 43201203 (+) True G28678
TU35847 lncRNA upstream 271323 43109050 ~ 43120781 (+) True G28637
TU35743 lncRNA upstream 769947 42621950 ~ 42622157 (+) True G28548
TU35721 lncRNA upstream 805436 42584232 ~ 42586668 (+) True G28527
TU35705 lncRNA upstream 891123 42500674 ~ 42500981 (+) True G28511
TU36139 lncRNA downstream 483378 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA downstream 483454 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA downstream 483454 43894185 ~ 43895128 (+) False G28862
TU36226 lncRNA downstream 643234 44053965 ~ 44056608 (+) True G28931
TU36252 lncRNA downstream 1280810 44691541 ~ 44749908 (+) True G28956
AMCG00008141 mRNA upstream 54066 43336941 ~ 43338038 (+) True AMCG00008141
AMCG00008132 mRNA upstream 86574 43292669 ~ 43305530 (+) True AMCG00008132
AMCG00008128 mRNA upstream 132909 43252597 ~ 43259195 (+) True AMCG00008128
AMCG00008130 mRNA upstream 140578 43232310 ~ 43251526 (+) True AMCG00008130
AMCG00008127 mRNA upstream 168978 43219099 ~ 43223126 (+) True AMCG00008127
AMCG00008142 mRNA downstream 60919 43471650 ~ 43494202 (+) True AMCG00008142
AMCG00008140 mRNA downstream 86557 43497288 ~ 43507053 (+) True AMCG00008140
AMCG00008146 mRNA downstream 194526 43605257 ~ 43621143 (+) True AMCG00008146
AMCG00008145 mRNA downstream 251833 43662564 ~ 43663708 (+) True AMCG00008145
AMCG00008150 mRNA downstream 267384 43678115 ~ 43695564 (+) True AMCG00008150
TU35919 other upstream 90682 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 243061 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 283862 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 1398727 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 3144866 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 1612417 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 1738698 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 1929865 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 2029782 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 2857160 46267891 ~ 46268327 (+) True G29353

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_02919027_02938762.mRNA True 6169 mRNA 0.48 42 CI01000306 2918888 ~ 2938762 (-)