RNA id: AMCG00008145



Basic Information


Item Value
RNA id AMCG00008145
length 943
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00008145
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43662564 ~ 43663708 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atgaaagtgGTCGGATCTACCTGCGCCCTGAAGAACAAGGTTGGCAGCGAGGACATGGTGCGCTGTCTGTCCGAGCAGAGCCTCGCCATCTCCAAGTGCAAGATCCCCTTGCTGGACGAGCAGATGAACGTCTTCCTCTACGACATGAACAGCTGCTACAGCAAGCTGAAGGAGCTGGTGCCCACGCTGCCGCCCAACAAGAAGGCGAGCAAGATGGAGATCCTGCAGCACGTCATTGACTATATCTGGGACCTGCAGCTGGAGCTCGACTCCCCGGGCATGAACCGTCAGCAGGCGGCCAACGGATCGCCCCTCACCCGGTCACCGCTGACGACGCTCAACGCCGAGCTGGCCAGCATCGCTGTCGAGaATGGATGCTCGGATGACAGGATCCTGTGTCGCTGATGTGATCTGTCTCTGGAAGCTGTAACCCATCTTGGACAAAACGGGAACAGTAATGAGAACAAACAAGGTGCCTATGAGTGACGTTTCATCACTTCGTTAACCTTGACCTAGTAGGGAAGTAGTAAACCTCCCATAGTAGAAGAAAAAGACTTTAAAAAGCGACATGCAGGGGGCTGTCCGGCGATCCGGCTCCCCTCCCTCGGAGGACCCGGGCGGGCGCAGCTTCCACCGGCCGCACGACCTGGCGGCGCCCCGTGTGCAGCATCGCAAGGACCGCTCTTGACTGCTCGCCATCCGACAGATTCACTGGAGAGACATGGTTTTCtccttttgtctttctttatcttttttgaTCTGTAAATTTTTACACGTaggagagagattttttttttttctatattttgtaaaaaatgttaACTTCTCAGATTGCTgagttattattgtattgtatattacaaTGCTATGTGaaagtttatattgtttttttacaatgtacctaaaatggtgtttttattaaaacaagaaaagtattttgaaa

Function


GO: NA

KEGG:

id description
K04680 ID1; DNA-binding protein inhibitor ID1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU35900 lncRNA upstream 461361 43177802 ~ 43201203 (+) True G28678
TU35847 lncRNA upstream 541783 43109050 ~ 43120781 (+) True G28637
TU35743 lncRNA upstream 1040407 42621950 ~ 42622157 (+) True G28548
TU35721 lncRNA upstream 1075896 42584232 ~ 42586668 (+) True G28527
TU35705 lncRNA upstream 1161583 42500674 ~ 42500981 (+) True G28511
TU36139 lncRNA downstream 230401 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA downstream 230477 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA downstream 230477 43894185 ~ 43895128 (+) False G28862
TU36226 lncRNA downstream 390257 44053965 ~ 44056608 (+) True G28931
TU36252 lncRNA downstream 1027833 44691541 ~ 44749908 (+) True G28956
AMCG00008146 mRNA upstream 41421 43605257 ~ 43621143 (+) True AMCG00008146
AMCG00008140 mRNA upstream 155511 43497288 ~ 43507053 (+) True AMCG00008140
AMCG00008142 mRNA upstream 168362 43471650 ~ 43494202 (+) True AMCG00008142
AMCG00008143 mRNA upstream 251833 43392104 ~ 43410731 (+) True AMCG00008143
AMCG00008141 mRNA upstream 324526 43336941 ~ 43338038 (+) True AMCG00008141
AMCG00008150 mRNA downstream 14407 43678115 ~ 43695564 (+) True AMCG00008150
AMCG00008149 mRNA downstream 190317 43854025 ~ 43893098 (+) True AMCG00008149
AMCG00008154 mRNA downstream 312593 43976301 ~ 43999833 (+) True AMCG00008154
AMCG00008155 mRNA downstream 338026 44001734 ~ 44034340 (+) True AMCG00008155
AMCG00008156 mRNA downstream 370678 44034386 ~ 44036127 (+) True AMCG00008156
TU35919 other upstream 361142 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 513521 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 554322 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 1669187 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 3415326 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 1359440 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 1485721 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 1676888 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 1776805 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 2604183 46267891 ~ 46268327 (+) True G29353

Expression Profile