RNA id: AMCG00008146


Basic Information

Item Value
RNA id AMCG00008146
length 3616
RNA type mRNA
GC content 0.39
exon number 12
gene id AMCG00008146
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43605257 ~ 43621143 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATCCTGGCGCCCGGTCTTGTGTAACCTCGTACATCTTCTCGGGGGTAACTTGACATTCGAGCAACACGCATAAAAAATGGCCGATGTTGACCAGGGATCGGCGTTTGCCAGTGAAAGCTCCCCGGCTCTCGACAGTCTTAATAATGACACCGTATCGAATGGCACCGACTCCACCAACGCCACCGTAGCCAAGTTTGTCTCCACGCCTGAAGGCACGGCTCTGGCGTACGGCAGCCTTGTGTTCATGGCCCTGCTGCCCATCTTCTTCGGAGCGCTACGATCAGTCAGCTGCGCCAAGAACAAGaATTCCTCGGATATGCCCGAGACCATCACCAGCCGAGACGCAGCCAGGTTCCCCATCATTGCCAGTTGCACTCTTTTCGGACTGTACCTCTTTTTCAAAATATTTTCTCAAGAATACATCAATTTGTTGCTGTCAATGTACTTCTTTGTGCTGGGGATCCTAGCACTATCACATACTATCAGTCCGTTCATGAATAAGGTATTTCCTGCAACCTTCCCCAATAAGCAGTTTCAGCTGCTCTTTACACAGGGATCTGGGGAAAACAAAGAAGAAATTGTCAATTATGAGTTTGACACCAAAGACCTTGTGTGCCTGTGCTTCAGCAGTGTGGTGGGAGTTTGGTATGTCCTCAAAAAGCACTGGATTGCCAATAATCTCTTCGGATTGGCTTTTGCTCTCAATGGGGTCGAGCTGCTCCATCTGAACAATGTCAGCACTGGCTGCATCCTCCTGGGAGGCCTCTTTGTATATGATGTCTTCTGGgtTTTTGGCACCAATGTTATGGTGACGGTGGCCAAATCATTCGAGGCACCAATTAAATTGGTTTTCCCTCAGGATCTCCTGGAGAGGGGACTTGGGGCCAGTAACTTTGCCATGTTGGGTCTCGGAGATATTGTAATACCAGGTATCTTTATTGCTTTACTTCTGCGTTTTGATGTCAGTCTGAAGAAGAACACCCGCACCTACTTCTACACCAGTTTCTTTGCCTACGTCTTCGGCCTGGGTCTGACTATCTTTGTCATGCACACCTTCAAACACGCTCAGCCTGCCCTCCTGTACCTGGTTCCAGCCTGCATTGGGTTCCCCGTACTTGTTGCTCTCATTAAAGGAGAGCTGACCGAAATGTTTAGgtATGAAGAAACCTCCCCTCTACCAGAGGAGGACTCCAAGGATGAGACAGAGAccgagaaaaaagaaaaatagcgACCACACAGTTGAGCACATCTTACTGCCTCTGCATTTCACAGCCCTTTGTATGGAGGGGGGTGTTGGCATTTGTTCTGAATGCGTTTGTTGTACACGGAAACGactaatatattaaatacctttaatttgatattttgtaacACATACATGGTTTGtttaaagaaagataaaagTACAACGGTGTATTGGTGCCTCCttattccattttttaatttattacaatttgcCTTGCATTCTCATAGgcttttttattacttatttttaaggccagaattttaaatttgttaaagTTTTTCCTAAACAAAGGaagaatattcatttttataaagaCCTCAAAACCCAGCTGCTGAAGGCTTTGCAAAATAATTGTTGATGTATTCTTAGTTTTGTTCtagtttaaatactttaaatttctttatactttttttcttgttaagtgattttgtttgcttttaacgATTTGAGCATTTTACTATGTGACTGCACAGCAGGATTGTATAAGTATCATGCACAGTTCTGAGTCGTGTATATCTTAGTCCTGTTGTATCCTTTTGTAGGATAATTGATTTTATATCCTTCCTGTATTCAGATTTTGTAAATTAGCTAAACATGCATGCAGGTCTTTAGTTATCAAATTCCTAACATTAGCAGGAAGGTGGATATTTAGTTCTTTATGCAGACATTAAGGAAGCAATTTTATCTTAAGGGAAGTCTAATTTGATTATATGAAATTGAATTGTGAGCTATCGGTTATTGCATTAATGATAGTGATTTGATATTTGATTAATTGTCATGCTTATCTTACATCATTTTGAATAGTAAGAGTTCCTGGAACTCTTTTTAAagtggatttatatatttaaagagcGCAGCTGAGCTTTATCTAAAGTCTTTATCTAAATATGTTTGTTGTCCTCTTTGTATTGATTGTGTAGCAGTGAACTGACACTGTGGCATACAATTGCAGTTACACTTTTTTTCAGAAAGGCTGTGCCAAACAAtggaacattattattttgtattttttactctATACTCGCTGTATCCATTGTTAAACCTGTCTAGTATTTGTGATGGGGATCAGGCTATATATATCatggtttattgttttatttaatttttttgttccCAGCATTAAAATGCTGTAACACTGATTCTATTCTTGAATCTGTAATATAGTCGGATATATCCAGTTTTTGATTTGTAGCTAATTTCCAATCTTTCTATATAATGTGCACTCGCAGTGGTTTTATGCTGGAAGGTAAGAGTATTAACAGACATTTTCTGATTCCTAACTTTTATCACAACTTACAAATGACAAGATCACTGTACTGTTACAGATCTAAAATTTAATGTTCTGGCCTTTTCAGAAAAAgggtgtgtggggaggggggtggggtgctGGGGGTGCAAGTAAGGGTGActggattttatatatatatatataaacatttatgtCCATGCTTTGCTTGGTGTACATTTAAGTATCttatttgcaatttgtttcCTATTGTACCAATGCAAGTTCATTCTGGCTTCTTTGTGGAGCAGCTGTTCCATTCTGCAATAAATTGTGGTGTACACCACTGTAGAGAAGCATACATCTCCAGTGTACAAGTGTTTCTTCTTGATCGATTTTGATTTGTTATTGGATCATAGGAGTTGCCAGTTCCTGGAATGGACAGGGCCCATGTTTCTGGGTACAACGTTAGGATGGCTGCCTCTGTTTGACCCTGCTGTAACAAACTTCATTACCATTCTCTGAAGAGATTCATTGTGAAAGCCCTTCAATTTTTaccaatttaataaaaacagaaatggctGAAGCGTAGAAAAAATTTTCTGATCATAAATTAAACCGTAAAAgagtacaagtttgtaatttgctatttgCCGAAAAagctgttttgatttggtctaggcatTTGCATGTGTGATGATCGTCAATACAAAAGCAACTCATCTGTGTTGCAATTCAGAGTGCTTTCTCATTCTCTTGACTTCTTctaattggggaaaaaaaatgaagtttgaACTGTACTCCTTAAACTGTTAACAAGTTAAACAATTCTCTGCTAATAAATCAATCCCATAAAATTCCCTAAAAACCTTTTTAAAGTTATTCTTGACATCATTTTGGATGCCATGTGTGCACAAATAAAGAATACGTCAGTGAGGAGCCTCATATTGTTTGAAGCTCACGAgagaatttatataaatacaaaatattgaaatgggCCCCATGCAGTGTATAAATGCATGGAAATTAACTTCACGTTTGgaagacatttttgttattcaCCTGGGTTTACTACATGTCTAAAAATGGACGTGTGAAATGTATCAGGCTTTATTAGAATTGCATGAGCTCGATATAAAATGAT

Function

GO: NA

KEGG:

id description
K09595 HM13; minor histocompatibility antigen H13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35900 lncRNA upstream 404054 43177802 ~ 43201203 (+) True G28678
TU35847 lncRNA upstream 484476 43109050 ~ 43120781 (+) True G28637
TU35743 lncRNA upstream 983100 42621950 ~ 42622157 (+) True G28548
TU35721 lncRNA upstream 1018589 42584232 ~ 42586668 (+) True G28527
TU35705 lncRNA upstream 1104276 42500674 ~ 42500981 (+) True G28511
TU36139 lncRNA downstream 272966 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA downstream 273042 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA downstream 273042 43894185 ~ 43895128 (+) False G28862
TU36226 lncRNA downstream 432822 44053965 ~ 44056608 (+) True G28931
TU36252 lncRNA downstream 1070398 44691541 ~ 44749908 (+) True G28956
AMCG00008140 mRNA upstream 98204 43497288 ~ 43507053 (+) True AMCG00008140
AMCG00008142 mRNA upstream 111055 43471650 ~ 43494202 (+) True AMCG00008142
AMCG00008143 mRNA upstream 194526 43392104 ~ 43410731 (+) True AMCG00008143
AMCG00008141 mRNA upstream 267219 43336941 ~ 43338038 (+) True AMCG00008141
AMCG00008132 mRNA upstream 299727 43292669 ~ 43305530 (+) True AMCG00008132
AMCG00008145 mRNA downstream 41421 43662564 ~ 43663708 (+) True AMCG00008145
AMCG00008150 mRNA downstream 56972 43678115 ~ 43695564 (+) True AMCG00008150
AMCG00008149 mRNA downstream 232882 43854025 ~ 43893098 (+) True AMCG00008149
AMCG00008154 mRNA downstream 355158 43976301 ~ 43999833 (+) True AMCG00008154
AMCG00008155 mRNA downstream 380591 44001734 ~ 44034340 (+) True AMCG00008155
TU35919 other upstream 303835 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 456214 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 497015 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 1611880 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 3358019 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 1402005 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 1528286 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 1719453 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 1819370 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 2646748 46267891 ~ 46268327 (+) True G29353

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043610 False 1953 mRNA 0.47 12 NC_007134.7 480423 ~ 493384 (-)
grasscarp (Ctenopharyngodon idella) CI01000021_05693567_05698301.mRNA True 952 mRNA 0.47 5 CI01000021 5693173 ~ 5698301 (-)