RNA id: AMCG00008148


Basic Information

Item Value
RNA id AMCG00008148
length 1846
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00008148
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43666568 ~ 43676377 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACCACTGGGTTTTAATGCTCAGGCACTGAAGGGACACATTCCAACTGATATGATTTTAACCCTGTTTcGGAAGAAAATGGGCGAAGCTGAGGCCATTCCAGCCGACGAAAAACAAGCGGATTCCGGCTCTAGTTCGGTCGAGGAATCGGTCATATGGAGCCAAGAGGTGGAGGTGTGCCTTTTCCATGCAATGCTAGGTCACAAACCCGTAGGTGTAAATCGTCATTTCCATATGATCTGCATTCGGGATAAATTCAGCCAAAATATCGGTCGACAGGTGTCATCAAAAGTGATTTGGGATCACCTGGGCACAATGTATGACATGCAGGCTTTGCATGAATCAGAAATCTTGCCTttccccaattctgaaaaaagTTTTGTTCTTCCAGAAGAAATCATTCAGGAAGTGAAAGAAGGTAAATTGGCAGTGGAAGAAGAAATCAAAGATGAAataaaggaagagagagacccGCCCGCAACAGTGGAAGAAGGCAGCAATTCCTCTGTGAAGATGGAAAAAGCCAACAGCAAAGACAAGGAGAAAGACAAAGAGAGGGGTTCAGGTGAGAACGCAGCGAAGGAAGCTGCGGACAAGAGGAAGAGGAACCGAGTGACTGAGAAAGTGCTGAATGCAAACAGTAACCCCTCCAGTCCCAGCGGGGCCAAGCGGCGCAGAACATAGCCCCCAGGCACCGCCACATGCCACTGCGACAGGCACGCACCGAGGCCCGGCAACGGCAGCCAGCACAGTTCTGCGATGCTGGGGACACGAAGGATGTTGTAAGATTATTTATCTGTGTAAGGCAGCAGTAAGTAGGGGGATAGAGTTGTACTCTGTCAGTGTATAGGTCTGTTTTTAAGGTTGAGCCACAGGAGAGATCGAATCGGGTCTTGTAtggtcttttgtttttacacaaaccCAAGAAAACTGTAATCTCATTCATCTGCTGGATTTTAAACTGGGTATTGAAATGGTCAGGCCAGGGTGAGTGGGCTGCAGGATTGATCGAAGCATCCCTCTCCTTGATCTGAGGGAAGTACAAGCAAGGACCTGATCTTGTGATGTTTCGTTTTCAGTGTTGTGTGAACTCGTCCTCCATACTAGGCCATCCAGCTCCAACTATTGGTTCTAAACACAGTAACACAAGCAGGGTGGAGATGTGACTGCCCTGAGGTTATGCAGTAAATTGAGAGACCTATACAAGGCAGTGGCTGCTGGGCAACAGGTCTGGCCTGGAATGTCTTGCGTTGGCCCATCTTTAGATTCCTGTTATCCATGTGGACGTTTTAGTTGATTCACAACTGCAGATATTTCATGCAAAGATCAGTTTTTACAATACGAAATTCTGAATTGGGCATTTttattcccagaatgcattcaactgtttatgtttttagtgtCTGATCACCCTCATCCCTTCCTTTCTTGATTACTGAAACTTAGATTGGATTATTATTAGCAATATAGTTCTCGTTAATGCAGGTCTGATTTCTACTCTTCGAGTTCAATCTCTGTCTTGTGCACAAGTGAGAATTttaactgtgtgttttgttagtAGCAGCATCTGTTGATGGTGTCTTTAACTGAATACGTTGAGAGGATCTAGCTACATGTCTAACTACCAGTGACCATCAGAACTACAAATCCTAAATTCATGAGTATTTCAGGCATGTacttctttgtttttgcttttgtattcggtttttattgcattttgtttaatttattgaagtTGTTCCCTTTTAAGactgttttattaaactgaGACAacattgtgctttgttttatttataatggcATTCATTCACAATGGCAAATGTATTTAGgtattgtattataaaac

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043189 H4/H2A histone acetyltransferase complex cellular_component

KEGG:

id description
K11343 MRGBP; MRG-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36079 lncRNA downstream 83155 43510760 ~ 43583413 (-) False AMCG00008144
TU35870 lncRNA downstream 568095 43097198 ~ 43098473 (-) False AMCG00008124
TU35727 lncRNA downstream 1071708 42522805 ~ 42594860 (-) True G28532
TU35706 lncRNA downstream 1165572 42500677 ~ 42500996 (-) True G28512
TU35703 lncRNA downstream 1189578 42475720 ~ 42476990 (-) True G28509
TU36187 lncRNA upstream 187230 43863607 ~ 43893808 (-) True G28900
TU36196 lncRNA upstream 217802 43894179 ~ 43895951 (-) True G28907
TU36208 lncRNA upstream 319741 43996118 ~ 44000866 (-) True G28914
TU36272 lncRNA upstream 810833 44487210 ~ 44487419 (-) True G28973
TU36273 lncRNA upstream 989966 44666343 ~ 44666577 (-) True G28974
AMCG00008147 mRNA downstream 110535 43533559 ~ 43556033 (-) True AMCG00008147
AMCG00008144 mRNA downstream 136481 43512861 ~ 43530087 (-) True AMCG00008144
AMCG00008135 mRNA downstream 226502 43432676 ~ 43440066 (-) True AMCG00008135
AMCG00008136 mRNA downstream 234482 43411209 ~ 43432086 (-) True AMCG00008136
AMCG00008139 mRNA downstream 257635 43396590 ~ 43408933 (-) True AMCG00008139
AMCG00008152 mRNA upstream 220839 43897216 ~ 43922028 (-) True AMCG00008152
AMCG00008151 mRNA upstream 285701 43962078 ~ 43972300 (-) True AMCG00008151
AMCG00008159 mRNA upstream 368556 44044933 ~ 44071985 (-) True AMCG00008159
AMCG00008158 mRNA upstream 397286 44073663 ~ 44082848 (-) True AMCG00008158
AMCG00008164 mRNA upstream 1045362 44721739 ~ 44740915 (-) True AMCG00008164
TU35782 other downstream 901914 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 1816678 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 2464743 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 2649320 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 4161976 39500321 ~ 39504592 (-) True G27861
TU36269 other upstream 741497 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 2374318 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 2804569 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 4037557 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 4447548 48123925 ~ 48124682 (-) True G29544

Expression Profile