RNA id: AMCG00008152


Basic Information

Item Value
RNA id AMCG00008152
length 4653
RNA type mRNA
GC content 0.59
exon number 23
gene id AMCG00008152
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43897216 ~ 43922028 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaGTAGCAGGCAATCAGACGGGTCCAACTGGAAAGGAATTGGCAGACTgcccacaaaaacaaactaagcCGTCACAGTGACAGATTATAGGCAAAGAAAAACCCAGAAGTCTTGCAAGAATCTTCCTGAACTGTTTCTATGGACGTCCATTTAAGTCGCTCTGATCTGGACTAAGGTGGGATGTGATGTCGAATACGGCTTGAAATCATAATTCTATACTGCTATAGAGGTGCTGATATGAGTTTAAGATGAGTGGACTGGGAGACAACTCCTTGGACCCTTTGTGCTCAGACCGGAAACGCAAGCTCTCCACCTGTGACACGCCAGGGCTGGGATGTGACAAAAGACGGCGCGAGCAGGAAAGCAAGTACATCGAGGAGCTCGCCGAGCTGATTTCAGCAAATCTCAGCGACATCGATAACTTCAATGTCAAGCCTGACAAGTGTGCCATCCTCAAAGAGACCGTTCGTCAGATCCGACAAATAAAGGAACAAGGGAAAGCATCCTCAAACGACGATGACGTCCAGAAGGCTGATGTGTCCTCAACTGGTCAGGGGGTCATTGACAAGGACCACCTTGGGCCCCTCCTCTTGCAGGCCCTGGATGGCTTTCTGTTTGTGGTTAACCGAGAAGGCAGCATAGTGTTCGTTTCGGACAATGTGACGCAGTATCTGCAGTTCAAGCAGGAGGAGCTCATCAACACCAGTGTCTACAATATCCTTCATGAGGAGGACCGCGAGGACTTCCACAAGAACCTGCCAAAGTCTAACCTGAATGGGGTTTCATGGAGTAACGAGGCGCCCCGCCAGAAGAGCCACACTTTCAACTGCCGCATGCTTGTGAAGTATGGCCTCAACCCCTCGGAGGAAGGCGCCGGGAGCCTGCGCTATGAAACCATGCAGTGCTTCGCCCTGACCCAGCCCAAGGCCATGATGGAGGAGGGGGAAGATCTGCAGTCCTGTATGATTTGTGTGGCGAGACGTGTTACTGCAGTCGAGAGGACGGAGAGTTTCATTACAAGACACGAGCTGTCCGGGAAGCTGATACACGTGGACCCCAATTCCCTGCGTTCCTCCATGCGGCCAGGCTGGGAGGACCTGCTGCGCAGATGTATCCAGATGTTCATGCATCACAGCGAGGGGCAGCCCTGGTCTCACAAACGCCACTACCAGGAAGCCTACATGCAGAATCACGCTGAGACACCTCTGTACCGGTTCTCTCTGTCTGACGGCACTCCAGTGACCGCACAAACCAAAAGTAAACTTTACCGCAATCCAATGACCAACGAGCCCCAATGCTTCATATCCACTCACCTGTTGCAAAGGGAGCAGAACGGATACCGTGCAAACCAGGGACCGGTGATGCAGGGCATGAGACCACCAGCGATGGCCAATGCCAACCCCAGTGCCCCCATGAACATGCCCCCTGCTCCAGGGATGGGCATGGGGATCAACAGGGGCTACGGCATGAGCGAACAAGGCCACGTGGGCCAGATGGGGGGCTCCATGTATGCGGGTGGCAACAGGATGATGCAGATGAACCAAGTGAATCAGATGAACTCCATGAATCCGATGAATCAGATGAATCCAATGAATCAGATGAACCAGGTCAACCAGATGTCTCAGATGAACCAGATGAATCAAATGAATCAAATTAACCAGATGAATCAGATGAATCAAATGAATCAGATGAACCAGATGGGCCACCCTGGCCCCAccatgcagcagcagcagcagcagcagcagcagcagcagccacctTACCAAGgtcTTCACTCTCCAATGGGTCCGGGCAGTGCTGGTGGAGCCGGGACTGGAGGAGGGGGCAGTAGCTACTCGAGCAGCTCACTCAATGCTTTGCAAGCGATCAGTGAAGGTGTGGGCAACTCCCTGCCCTCCTCTCTGTCCTCCCCTGCCCACAAACCCGACAACTCGCCCAGCATCAACTCttcgcagcagcagcagcagccgcctccaccacagcagcagcagcaacagagcCAACAGTGCAAGCCGAGTCGTGTGGACTCCCCGAGCCCAGCAGGCATTTACAACACCGGGGGGGATCATCACCACCACctgcaccaccaccaccaccaccacaacccACCCGAGAGTGCTGCGGACCGGCCCGACAGCCAGGCCAGCCTGAGGGGGAACAAGGAGAGCAGCGAGGCAGGGCCAGGTAACGCCGAGCCGCAGCGAAGGATGCCAGACAGTAAGGGCCACAAgaaactgctccagctgctgACGTCACCCACGGATGACATTAGCATGGTGGCCGGGGGCGTCCCCCCATCTGGCGCCACCACGCCCACCTCACTGGACTCCAAGGAGCCTGTGGGCTGTGTCACCAGCCCCTCGTCTACTGGcgtctcctcctcttcctcagctTCTGCAGGTCAGGCCCCTGGTGGGGTCTCGTCATCCTCTGCAGGGGCTCAGCATGCAGCCTCCTTGCAGGAGAAACACAAGATCCTCCACAAGCTGCTGCAGAACGGCAACTCCCCAGACGAAGTGGCCAAGATCACGGCCGAGGCGACGGGAAAGGAGAACGCTGGCCACGAGGCGGGATCGGCAGACATGGGGACCATGACGACAGCTGGCGCAGGAGGAGGGGCTGGGGCTGCAGGAGCGGGGGTATCAGACATCAAGCAAGAGCAGCCCAGCCCCAAGAAGGAGAAGCCCAACGCCCTGCTACACTACCTCCTGAACAAGGATGACTCCAAAGAGCCAGCTGATGTCAAGCCaaagctggaggagctggaggggAAGAACTCGCAAGGGACCTGCAGCAGCTCGGGCATCATGGCCTCGACTCCTGACAGCGGAGAGAACAAGATCAAGACCGAGCCGCCAGACGAGATCGATACCCTGGAGACAATCTTGGGAGGTCTCAGAAACCCCAACTCCAGCTTTTACCAAGAGTCTGGTGCGGGGGGAGGGAATGACGGCGGGAACAAGCAGAATAATTGTTCAGAAGATAGTGTGCATGCACTGAGGAGCTCTGATATGGCGCCTGGACCCCGGGCCCCCTTCCAGCGCACCATGTCTATGGACGGGAAACCACCCACGGGTGCAAACTCTGCCGGTCGGCGCAGCGCCCCCCTCACCATGCCCATTAAACAGGAGAGCTTGGACAGCCAGCGCATGATGGGGGGGCCAGAGAGCTTCCCAGTGAACATGGGCATGGTCAACAGAGGGATGGGCGTCCCTCAGCGCTCTCCCATGGGGGGCTCGGGGGAGTGGGGGCTGCCAAGGTCGAACGCCAGCCCTGTGGGCTCGGCTGGGCATCCCTCCATGATCCGCCCAGGAATGGACTACAGCTCCAAGGCCATGATGGGAGGTCCCCTGGTTGGCAGGTCAAACAGTGTGCCGGGCAGGGCGTCGAtgctgcagcagcagctgaTGGATATGGGACCGAACGATATCAACATGGGCATGAGTCCCTTCAGTCAGCAGGGGCATCCTAGCCAGTCCCCTTCCTGGCCTGACAACGTGATGGATCACGGGCCTCAGAGCAGCCAGAACAGGTACACCCAGTCTTCCCTGCAAAATACAGCCAAGACCCGGCCCAGGAGACCGTTCGGTAACCCCCTGGACGAGCTGCTGGTTCCACCTTCCACCAGCGAAGGGCAGAGCGACGAGCGCGCCCTGCTGGACCAGCTGGACTCGCTGCTCAACAACACCGATGGCATCGCACTGGAGGAGATTGACCGGGCGCTTGGCATCCCCGACCTTGTCAGCCAGGGCCAGGGAGTGGATCCCCAGGGTGATCCCTTCCCTGGGCAGGACCCATCCATGGTGATGGACCAGAAACCTCCCATGTACAGTCAAGGCTACCCCGGACCCCCAGGCATGGCAATGCAGCCCGCTTATAACAACCCCATGCAGGGGCAGCCCGCCGGCTTCAACCCCATGATGAATCCGATGAGCCAGCAGGGCAGCTTCCCCATGTCTGGGATGCACCCCCGCGCAAGCATGATGCGGCCGCGCATGATGAACGCCCCCAAACCGCTGCGGCTGCAGCTGCAGCAGAGACTGCAGGGCCAGCAGTTCATGAATCAGAGCCGCCAGGGCCTTGGGATCAAGATGGAGAACACAGCTGCGGGGAGCCCGGTGCTGCGGCCCGGCATGCAGCCCCCCATGGGGGGACAGCCTGGCTTCCTGAATGCTCAGATGATGGCCCAGAGGAACCGGGAGATCCTGAACCACCAGCTGCGGCGCCAGCGGATGATGATGCTCatgcagcaccagcagcagcagcagcaggcagcgGCCGCGGCCGCCGGGGGCTTCAGCCCTCCACCCAATGTCACCGCGCCCACCGGCATGGAGGCCCCCATGGTCCAGCCTGGTGCACAGTTCTCCTACGCCCCCAACTACGGGATGAACCAGCAGGGGGACCCTTCATTCGTCCGAGCAGCCAGCAGCCCCCCCAGCTCCATGATGTCTGCCCGCCTGGGGCCGCCCCAGAACCCCATGATGCAGCAGCACCCCCAGAGTGCGCCCATTATGATGATGAACGGCTCGATGCCCGTCAATGGCAGCGGGGCCCACATGGGGCAGCTGCAAGGGCAGATGAACATGAATCCCATGGCTATGGGGCGGATGCCAATGGGACCAGAGCAGGTGCGCCCTCTTCCCATTTGA

Function

GO: NA

KEGG:

id description
K11256 NCOA3, ACTR, KAT13B; nuclear receptor coactivator 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36196 lncRNA downstream 1265 43894179 ~ 43895951 (-) True G28907
TU36187 lncRNA downstream 3408 43863607 ~ 43893808 (-) True G28900
TU36079 lncRNA downstream 313803 43510760 ~ 43583413 (-) False AMCG00008144
TU35870 lncRNA downstream 798743 43097198 ~ 43098473 (-) False AMCG00008124
TU35727 lncRNA downstream 1302356 42522805 ~ 42594860 (-) True G28532
TU36208 lncRNA upstream 74090 43996118 ~ 44000866 (-) True G28914
TU36272 lncRNA upstream 565182 44487210 ~ 44487419 (-) True G28973
TU36273 lncRNA upstream 744315 44666343 ~ 44666577 (-) True G28974
TU36277 lncRNA upstream 757788 44679816 ~ 44680042 (-) True G28977
TU36278 lncRNA upstream 759397 44681425 ~ 44681769 (-) True G28978
AMCG00008148 mRNA downstream 220839 43666568 ~ 43676377 (-) True AMCG00008148
AMCG00008147 mRNA downstream 341183 43533559 ~ 43556033 (-) True AMCG00008147
AMCG00008144 mRNA downstream 367129 43512861 ~ 43530087 (-) True AMCG00008144
AMCG00008135 mRNA downstream 457150 43432676 ~ 43440066 (-) True AMCG00008135
AMCG00008136 mRNA downstream 465130 43411209 ~ 43432086 (-) True AMCG00008136
AMCG00008151 mRNA upstream 40050 43962078 ~ 43972300 (-) True AMCG00008151
AMCG00008159 mRNA upstream 122905 44044933 ~ 44071985 (-) True AMCG00008159
AMCG00008158 mRNA upstream 151635 44073663 ~ 44082848 (-) True AMCG00008158
AMCG00008164 mRNA upstream 799711 44721739 ~ 44740915 (-) True AMCG00008164
AMCG00008165 mRNA upstream 827062 44749090 ~ 44752458 (-) True AMCG00008165
TU35782 other downstream 1132562 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 2047326 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 2695391 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 2879968 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 4392624 39500321 ~ 39504592 (-) True G27861
TU36269 other upstream 495846 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 2128667 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 2558918 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 3791906 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 4201897 48123925 ~ 48124682 (-) True G29544

Expression Profile