RNA id: AMCG00008153


Basic Information

Item Value
RNA id AMCG00008153
length 2571
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00008153
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44040778 ~ 44044810 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGCCGCCTCCGGAGCCCTGTCCCGACGGAGCGCAGGAAGTCGCCGTGGCGAGCGGGGGCGCCGTGGGCGGCAGTGAGCAGGGCCTGGCGCTGGGCGCGGAGCTGGGTCTGGTGGAGATGACCGAGGTGGAGTACACGCAGCTCCAGCATCTCATCTATGAGGTGCAGGTCGCCGAACAGGACGGGCCGGGGGAAGCGGGTTTACCCCCGGACGTTTATACCACAAGCCAGCCGGCCCAGCAGACGGGATACCAGAGCCCCCATCCGCACGGCCAGATAGAGTACGTGTCGGACAGCAGTCCCCCCACACCCGAGTGCGCCGCCCCCGCTCGGCAGCACGACCCCTGCGACGCGCCCGGCTGGTCTGCCACTGCCGACCCGGGGCCGGCGCACTTCCAGCAGTTGAAGATGATCGTGATGAGCGACCCCAGCTCGGCGGAGCGCACCCCGGCCGGCCGCGGACAAGTCGCCGGCTCTGTTTTTGCCCGAGTGAGGAATGCGACGGAGACGGAGCGAGAGATTAGAGGCGAGGCCGGCGAGAGCAGAAGGGCCGTCCCGGACACCAGAGCGCCCCCCGCCGCCCGAGTGCGCCTGGAGAGGAGGTTTAACAGCAGCCCGTCCCCGCTGTCCAGAGCCCCGGACTGCCAGTCCTCATCCGGCGCCATGAACAAtttcctgTCGATGCTTCACCATCCATCAGAGCTGCCGGGGGTGAGCATGCAGTCCCAGCAAAATAAGTACCTCAGGATGGGCAGGAGCAAGAGCGCCCTCTCTGCGGTGCCCCTGGAGTTCGCCCACCCCCTGTATGGTGCCAGCCTGTGCAGCTCATCAGGCAATATCAGTTCCTCTCAAGCACAGACAGTCGGAACCATTGCACAGATGCTGGAGTCCACGAATCCCAGAAACTGCACCTTTCATTATCAGCAAGAGAGAGATTCTTCAAAACCAGCAGTCCTTCAGCCAATTAAGTCTGTCGTTGAGCAAGTATGGGTTAAAGTAGAAGAAGACACATtgcagaaaaacatattgaacaAGCGCAGCCGGACCGGTGGGCGTCAGGTGGGCACTGAGCGGCCCGCTCTCAAAGATATCCAAAACATACCCAGGGCCCAGAGCAGCAGAGCGCCTGCTGGCACCCACAGGAAGGGCAGTGGGGAGGAGGAGAACTTGCGCAGAGAGAAGCACAACAGCATGGAGCGAGACCGGAGGCGACGCATTCGGATTTGTTGTGACGAGCTGAACTTGCTGGTTCCGTTCTGCACCCCCGAGACGGACAAGGCTACAACACTACAGTGGACAACAGCGTTTCTTAAATACATTCATGAGATCGATGGAGACCGCCTTAAAACGGAGTTTGAGAGTGTGTTTTGTGGCAAGACTGGCAAACGCATGAAACTTGCTAAAGCTGAACAGTTTGTTGCTCATGGAGAGGCTAGAGATCCACcaaacactgcactgctggAGCAGAAGTGATCTTTGTAAAAGGACATATGCACAAGCAGGATTTATTTGCAACAACGCCAAACTAATGCTCTGTTTGCTTTCATACAAACACAGGAAGAATGTAAAACAGTTGTGTAATCTAGTTTACACCCCGAAATACCTTTCCATCTTTACCTGGCTGGTAATTTACAGCCACAAAACAGCATTCAACAATTGTGTAGTTTAGTGTAAGATCATTTGAATGGTCTTAATATAGTATGTTAGTCCAATAAATTAAAACGCtatgattaaaaacaatgcagccATTACAACCCTGTTGAAAGCCCGCACATCTTATTTCGAAATGTCATTGGATCACATAAGAATGCTTCCATAGTCTAGTTCAGgggctttatttttaattttaataaaatattcaagaaCCCaacattagtttaaaataaggtTGATATCcctatgtattgttttacaacCCAAACCACACTAACCACAGTCAGCCGTTCCCAGGAGACCAGGTATTAGCTGTGAcagcactgtttttgttttgtatggctCCTATCATGGTATAACAGTGGCACCAACAAATCAAGTCCTGTCAGACTAAATAAAGGACATTTGATcttttattacaaaacacatttgaaactttattcgattttttttttttttttgtggaagaTTGTGATACTTTGTAAatgtcaaaaaagaaaagaaaattaaactggaaaataaaagtacatgGAACTGTTCTACAGAAAATGTTCCAGAGGTGGCACTGTTTCTCCATGATAGAtgcaaattgttaaaaaaaaaataaaaactgccagGTTTTCTCCAGTGGctcaatgcattattaatactCTAACTTGCATATGAACATGTACAGATAAAATGATTgaatttaatatgtaaatatatgagaTACCAAAATTAGTTGTTTGTTCCCTATCAAAGGTAGCTATTTCACCATCAATATCTTACCTGAGTTTAGTATTAGAAAaggatgttctttttttttccttgagagcatttgatttaaattattaagaGCATTGTGACGTGAGAAACGTATGTTTTCTAGTTTAATATTGccggtttgtttttcttcatttgtgcCTATATTTACA

Function

GO: NA

KEGG:

id description
K09092 TCFL5, CHA; transcription factor-like 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36139 lncRNA upstream 144827 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA upstream 144827 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA upstream 145650 43894185 ~ 43895128 (+) False G28862
TU35900 lncRNA upstream 839575 43177802 ~ 43201203 (+) True G28678
TU35847 lncRNA upstream 919997 43109050 ~ 43120781 (+) True G28637
TU36226 lncRNA downstream 9155 44053965 ~ 44056608 (+) True G28931
TU36252 lncRNA downstream 646731 44691541 ~ 44749908 (+) True G28956
TU36298 lncRNA downstream 723867 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA downstream 751114 44795924 ~ 44798463 (+) True G28995
TU36485 lncRNA downstream 1308906 45353716 ~ 45354079 (+) True G29148
AMCG00008156 mRNA upstream 4651 44034386 ~ 44036127 (+) True AMCG00008156
AMCG00008155 mRNA upstream 6438 44001734 ~ 44034340 (+) True AMCG00008155
AMCG00008154 mRNA upstream 40945 43976301 ~ 43999833 (+) True AMCG00008154
AMCG00008149 mRNA upstream 147680 43854025 ~ 43893098 (+) True AMCG00008149
AMCG00008150 mRNA upstream 345214 43678115 ~ 43695564 (+) True AMCG00008150
AMCG00008157 mRNA downstream 61645 44106455 ~ 44131719 (+) True AMCG00008157
AMCG00008160 mRNA downstream 215165 44259975 ~ 44268323 (+) True AMCG00008160
AMCG00008167 mRNA downstream 532562 44577372 ~ 44653905 (+) True AMCG00008167
AMCG00008162 mRNA downstream 620826 44665636 ~ 44683700 (+) True AMCG00008162
AMCG00008161 mRNA downstream 698820 44743630 ~ 44748571 (+) True AMCG00008161
TU35919 other upstream 739356 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 891735 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 932536 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 2047401 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 3793540 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 978338 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 1104619 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 1295786 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 1395703 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 2223081 46267891 ~ 46268327 (+) True G29353

Expression Profile