RNA id: AMCG00008155


Basic Information

Item Value
RNA id AMCG00008155
length 6723
RNA type mRNA
GC content 0.52
exon number 20
gene id AMCG00008155
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44001734 ~ 44034340 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATTTTGACCCACCGAGAGAAAATGGAGGACTGAGCGGAGAGCGTCCTAGATTGCGAGACGGCGACGAACATAATAATCCCATCAGAAGAAGGAACAGACTAGTGATGAGTGATGATCTGGACCTTCTGAACGAGGAGATCGAGCGGTTATCTCGTCAGACCAGAGAGGGAGGTTGCTCCCCGACTCTTCCCTCAGTGTCCAGTCTGTCCCCCAGGGACTTGCTGCACGTTTGCCGGATCTCGGAAGAGCACTCTCAGatATTCTGTTTGAAAATAGTGTCATCTATGGAGGACATTGTGAGTTCTGAGCTCTCTCTAAACCCTGAGTCAGAACAGAGCCAGGATCCTATGGATATCAGCTCTCAAGTTTCAACCACAGTAGATGAAAAAGAAGAGCAAAGCAATGAAGACAGTGAAAAGCTAGAGGAGGCAGGGAAGTCTGTAAAACCCACTAGCAAGGAGTTTCGGAAGACGTGGGGTTTCCGGAGGACCACGATCGCAAAGAGAGAGATGCCAGGAGACGTCGATAGCCAGGACTCTGCAAACGCACCGTTGCGCCGCAGTGGGCGCCAGGCGAAGAGGACGGACAAGATGGAGGAGTTCCTGTCGACGGCCAAACGTGGGCGAGGGGGCCGACGCAGCGCCCCAGCCAACCTGGAGAGCTCAGACCCTCCCTCCCAAACCCCTACTGACGTAGAGACAGCCTCCGAGGCCAGCTTTGACGGTACTTCAGAGACCAAGGCAGGAAGTGAGATCACTGACCCCAAGGCAGAGTCCCCAGAGAGAGAACAGGGTGACAAAAAGAAAGCAGAGGGCTCTGGCATGGAGGAGGGCAGCACAGATGAGGATGAAGACAGTGATGAGCTGACTCTAAAGGAGCTGCAGAACCAGTTGAGGAAGAAGAGAGTAGAAGGCGAGACGGAGACAGCGGCAGAGCCTGATGCCCAACCTGAAGCAGAaccggaggaggaggaggaggaggaggaggaggaggaggctgaggCCGTGGCTGTGAAAGAGGAGGAAAGCCCTGAAAAACCCACAGAGGAACAGAGTGGCCGCCGGCTCTCGAGTAGCCCTggcaggggaggggggaaggAAACCACACTGGTCAAGAAGGATATCAAGCCCAAATCAGTGATGAAAACTGGCAAAGACCCAGGGGAAAAGGGACCAGCTTCCAGTAAATCTGAATGCGAGGGCTATGATCcaaatgcactgtattgtatCTGTCGGCAAAAGCACAACAACAGGTTCATGATCTGTTGTGACCGCTGCGAGGAGTGGTTTCACGGGGACTGTGTGGGCATCACAGAGGCTCGTGGCCGTCTGCTGGAGAGGAATGGCGAGGATTACATCTGCCCCAACTGCACCACGCAACAGGGCCAGCCCTGCGGTGGCCCGGACAGTGAGGGGGACAAGCTAGAGGCAACAAAGTCTGGCCAGTCCTCCGGACAGAGCGCCCCGTCTGCCGAGAAGCCTAACGAAGATCAGGGAATCAAAGGCAGAATCGAGAAAGCCACCAATCCCAgtgggaaaaagaaaataaaaatattccaGCCGGCTGTCGAGGCCCGTGAGCTTCCCAAGTGCATCGGCCCAGGCTGTGCCAACCACGCCCTGCCCGACTCGGTGTACTGCGGTAACGATTGCATTCTCAGACACGCCGCTGCTGCAATGAAATCTCTTTCTGACGTCAAAGAGCCCAAACCTAAAGAAAAACCTAAACCTAAAGCACAGAAAAAACCTCCTTCAAAAACCCAAACCAAGGGTCTGAAGAGACTCCTCCCAGAGCGCAAGGCTGTGAAGAGGACTGCAGAGGCGGCTATCAAGGCTGAGGAGGACTCGTCCGGCAGCGAGACGGAGCAAGCGGAAGAGGAGCCAGTTGTACCGTCCTGGTCCAGCGATCATAATTACAATGCAGTAAAGCCAGAAAAGACTGCAGCCATTTCATCATCTGTGTTTTACAAAGCGTCTTCAaaggagactgaagagagcagCGAGAAGAAGAAGGAGTCCAGTGTCGTCACACGCAAGCAGTCCCCGCCTGCTGCCACATCCCCCAAAGGGAATAAGAAATCCTCTTCTTCTGGTGGGCCATCGGCCAAAGGCAAGAAGCCTCTGCCTCCATCTGGGAGTACTAGTGGAACCTCCAAAAAACTCCTGCAACCTTCAAACAGCAACACCAACTCGAAGAAAGCCAGTCAGCCTGCGTCCAGACACCATTCCACAGGTGCCCTGAGAGTCGCCAAGACCACCTACACTATCCCAAAGAAGCAGCCTGctcagcaacagcaacaacagcagcaggcCCCACCACCACCTGCTTCCAGCCCTGCTGCTCCAGTCAAATCCTCTGCTGGATACTCGGCGCCCACAGGCCCTCCTGCCTCCTCCAGGCCTCCTCCACCCAGCACCCCCCAGCCTCAGCCCAACAACCAGATCAGACAGAATATCCGTCGCTCGCTCACCGAGATTCTGTATAAGAGGGTGAGTGACAGTGATGACCTGGAGATCTCCGAGAGTGAAGTGGGCAAGATAGCATTTAACATCGAGAAGGAAATGTTCAATCTGTTCCTCAACACGGACAACAAATACAAGAATAAGTACAGAACCATCATGTTTAACCTGAAAGATCCTAAAAATAAGGGGCTTTTTTATCGTGTGATCGGGAGTGAGCTTAGTCCCTTTAAACTAGTGAGGCTGAGCCCAGAGGAACTCCTGTCCAAAGAAATATCTGAGtggagacagaaagagacatcTGAGGTTCTAGAACCCAACCAGAAGTCTCAGCGAGAGGCACAAAAGTTCGGCCTGAAACAGGAGAACGTGCCCGATGTGGACATGGAGGAGTCTCCTCCCATGTCTGATGGAGACGTATGTATTAATGCCACCTCCCCACCGCCCCGCATGGCTTCTGCAGCAgaacCAGAGGAACCTCGTCCTGCCCCTGCTAAGAGTAGCCTCCCAGTCCCTGATATCTTTAGCAGCATGTTGAAGGACACGACCAGTGAGCACCGTGCTCACCTCTTTGACCTCAACTGCAAGATCTGCACAGgCCAGATGTCCGCTGAAGAGGAGCTGGTGCCGAAGAAACCCAAAATCTCTGCGCCATCTGCAGTGAAAAAAGCAGAACCCAAAGTGAAGCAAGAGCCGAGACCCTCGAAGCTGGGCATGGCTGGGGATGGGGCCACGGAATCCACTCTGGCCAACGCTTACTGCGAGCCGCCCCCTGGAAACGAAACTCCCATCATTGACTCCCCAGCTTCACCCGAAGAAACCAGCAACCCAGTGACTTCTTCCTCCCAGTCCTTCACTCCCATCCCCATCCCTGCCGTTTCGTCTGTGACAATAACACGCCGAGACCCCCGCACTGCTAGTTACCGTCCTGCTGTCACCGTGACCCCAGCATCCACCCTGGCATCCACAGTGGCCCCACCACTTAGTGCGGACACTGTCTCTACGACTGTTGTAGAACCCACCATTGAAGTTACCAAGCCTGCTATGCCTCCACCACCCCCGGCCCCCAGGTCCATCTTAATGAAACCGGTTTCTTCTCCAGACACCAGATACTTCGCCACTTCTTCATCCACTACCAGCATTGCAGAGTCTCGCTCTCCTCAGGATGGAGAAACCACTGTGTTCCTTGCCAAGCAGGAGATCCTATGGAAAGGCTTTATCAACATGCACACCGTGGCAAAGTTTGTCACCAAGGCCTATCTAGTTTCCGGGTCCTTTGAATATCTCTCGGAGGATTTACCCGATACAATCCACATTGGTGGACGGATTTCCCCACACACTGTCTGGGATTATGTGGGGAAGCTGAAAACATCTCTCTCCAAGgagctgtgCTTGATCCGCTTCCACCCGGCGACCGAGGAAGAAGAAGTGGCCTatatctctctcttctcttaTTTCAGCAGCCGTGGGAGGTTTGGAGTGGTGGCCAACAATAACCGTCGCATTAAAGACCTCTATCTTATCCCACTGAGTGCCAAGGACCCCATCCCTTCAAAACTCTTACCCTTTGAAGGGCCAGGATTGGAGTCTTCTCGTCCTAATCTTCTCCTTGGACTGGTAATTTGCCAGAAACTCAAGCGTTCTGGAGCCCCATCTGAGGGAGATAAGGGATATGAAGAGAAAAAATCGAAAGTTCAGATCCGAGATGAAGACGATGCTCCTCTTTCAAAACACTCCGTGCTTCCCAAGACTGAAATTAAACAAGAGAGAGCCTCTCTTTATAATCCAGAGATTCCCATGAGCACCACGCCTCCTGGATCTCCACCGTCCGTTACTTCCTCAGAATCCTCGTCTAACTCGCTCACAACCTCTTCAGTGCTGTCTTTGCTGTCCTCTGTGAAAGCTGGTACCACCGTGAGTGCTGGTGTGGATTCTTCATCCTCAACTTCCAGCAATGCTGCTTCTGGGGTAGTCAGCTCCTCTCCTCTGCAGCATATCCTTAAAACTCTGTTTGGCAAAAAGAAACCAGATTCTACTGACTCCTCTCAGTCCCCATCTGACCAGAGTCCTCTGGAACACACGGTGCCTTCAGCTCCTCTTCTTGATCCCATTGTCCAGCAGTTTGGCCAGATCTCCAAGGATAAAATCATAGAGGAAGATGAGGATGACAGACCCTATGATCCAGAGGAAGAGTACGATCCAGGAATGGGCTATGGTTTGGAGACTCCCATGGACACAGACAAAATGTTCGAAACCAATAAGGTGTGTGAGGTTGCTGACACAGATGATGTAGCCTATGATCCCGAAGATGAAACTATCTTTGAGGAAGCAAAAGTCATTGTCAGTGATTTCCCAAGCCGCTCCTTGGAAACCAAGACCAAACAGTCATCTGATGGTGAAACTGTGGCAGCTGGGGGTGAATCGTCTTCACTGACTGAACAACAAAAGATGCTGGAAGAGCTGAATAAGCAGATTGAAGAGCAAAAAAGACAACTGGAGGAGCAAGAGGAAGCCCTTAGGCAGCAGAGAGCAGCTGTAGGCGTGTCCATGGCACACTTCTCTGTATCTGATGCCTTGCTGTCACCGCCTCCTAAATCATTACTGGCAAATACCCAGTTGCTGCAATTGGGCAAAAAAGTGGAGGAATTAGTTTCAAAAACTCCAGCTGGCCAGGTCATCAATCAGAAAAGGGATCCAAGACAGAGCAGGGATCCCCGACAGGCAGCAGCAAATAGGAGGCTTACATCAGACTCGGAAAAAGAAGAGACTGCTGAAGCTTCTGCTGAAGTCTCATCATCCTCATTGCAGCCTTCTGAGTCACAGACTCAAACAGTCCCTTATATTGAGCCTGAGAGCACAGAAGTGGTCATTCCACTGTTGGGGGAGAAGATCGATCCGGATTTGGAAGACAACACACAGCCCGAGACTTCTGCTGAACCAACAGGGAAATTTACAGGAGACCGGAAGGCTGAGATAGTAAGCGACCCTTTTAAAGCTTGGCCAAATTCTGCAAGTATTTTAAAACCCGAGGACATTAAGAGTcttgaactgacacacaatgtCTTACTGCCAAACCCGACGCAAGCTCAGGTTTACCCACCATCTACTGTTAATGTTCCTCCTGTAACGTCCACAATGCCCATCCTCTCCCAGGACattacacacaacaacaacaactcaaTGGCAAACACTCAGACTCCTCTCATGCCGCAGATTGGAATGCCCAATCCTGACTTCAGGAACCCCCAGGAATTGCAGCAATCTATTCCTTACCAGCCCATAACTGGTCCTCCACAACTGCAGGGTGAGGGTGACCAATCCCAGTTCAGAGATCACATGATTTCCTATCCTCCATTCCAGGATCAGTGGGGTGGCTCTCCACAACAGTTTGATGGCCCCCGAGGACCACCACCGCCACACATGATGGGACTAAGAGGTCCTCCTCCCTTTCAGCCAATGGCACAAAGAGGTCCACCCCCACAAATGTTTGAAGGACCCAGAGGTCCCATGCCTCCCCAGCACATGGGACAGAGAGGTCCTGTGCCTGGACAGTTCATTGAAGGACATGGACCACCTCGTCCTTTTGAAGGACAAAATGATCCCCATCAGCCTCGATTTAGTGGTCCGCCTCCTCCCCTACATTTTTCTGGACCCAGAGGTCCCCTACCACCCTTTATGGGTCCACCACCTGGCCAGTTTGATAACAGGGGGCCCCCTCCTTCCCATTTTCAAGGGCCAAGAGGGCCTCTTGCTCCCCACCAGTTTGTGGAACATGGGCCCCAAAAGCCTTTGTTAGAAACGCCAAGAGGGCCTGAAGAACAGCATTTGATGGGTCAAGGGGGAGTCGACCACCACCTGCAGGAGGAGATATGGGAGGCCAGCGTTTTGCCCCAACAAACCAGTATGGTGGCCCAAGGGCTCCTTCCCCCCATCTTCAGCAGAACCAGAATGTGCCTTCACCACAGCACAGAGGGAGTTTTGAAGAGCACAGAGGCCCTCATCCTCCTCAATTTCAGGGTCAGAGAGGACCCCAACCCTCACCATATGGAGGAGGACCTAGAGGCCCCACACCTGCTCAGTTTCCAGACAATGGAGGACAACCCCGATTCCATTTTGAAAGTCCACATCATCCACCAGATGGTAGGCCAATGCGCCACCCTCGTCCTTTACTTCCAACACCTACTGAGGCCCCTATTCAAATACCAAACCGCTCGGGACAAAGTCCTGATTCCCACCAAGGTGAACATTGGCAGTCTTCTGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36139 lncRNA upstream 105783 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA upstream 105783 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA upstream 106606 43894185 ~ 43895128 (+) False G28862
TU35900 lncRNA upstream 800531 43177802 ~ 43201203 (+) True G28678
TU35847 lncRNA upstream 880953 43109050 ~ 43120781 (+) True G28637
TU36226 lncRNA downstream 19625 44053965 ~ 44056608 (+) True G28931
TU36252 lncRNA downstream 657201 44691541 ~ 44749908 (+) True G28956
TU36298 lncRNA downstream 734337 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA downstream 761584 44795924 ~ 44798463 (+) True G28995
TU36485 lncRNA downstream 1319376 45353716 ~ 45354079 (+) True G29148
AMCG00008154 mRNA upstream 1901 43976301 ~ 43999833 (+) True AMCG00008154
AMCG00008149 mRNA upstream 108636 43854025 ~ 43893098 (+) True AMCG00008149
AMCG00008150 mRNA upstream 306170 43678115 ~ 43695564 (+) True AMCG00008150
AMCG00008145 mRNA upstream 338026 43662564 ~ 43663708 (+) True AMCG00008145
AMCG00008146 mRNA upstream 380591 43605257 ~ 43621143 (+) True AMCG00008146
AMCG00008156 mRNA downstream 46 44034386 ~ 44036127 (+) True AMCG00008156
AMCG00008153 mRNA downstream 6438 44040778 ~ 44044810 (+) True AMCG00008153
AMCG00008157 mRNA downstream 72115 44106455 ~ 44131719 (+) True AMCG00008157
AMCG00008160 mRNA downstream 225635 44259975 ~ 44268323 (+) True AMCG00008160
AMCG00008167 mRNA downstream 543032 44577372 ~ 44653905 (+) True AMCG00008167
TU35919 other upstream 700312 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 852691 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 893492 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 2008357 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 3754496 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 988808 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 1115089 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 1306256 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 1406173 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 2233551 46267891 ~ 46268327 (+) True G29353

Expression Profile