RNA id: AMCG00008159


Basic Information

Item Value
RNA id AMCG00008159
length 3073
RNA type mRNA
GC content 0.52
exon number 28
gene id AMCG00008159
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44044933 ~ 44071985 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGCTCAAATGTGTGTGACTTTGAGTTCAGCCCCTCCAGCTGGAGACTCGGGTTTATCTGGATTCAAAGTGCACTCATTCACGGGCTCCGAGCTGCAAGGTGAAGGACCGGTCCGTTTTAAAACGGGAGGAGAGAGctaaaaggagagagaaaggggtaaccccttttttaacatattaaaatcGGAGCTGAGAGGACGGGAGCCATGGCTGCTTTCTCGGCTCTTGGGCTGCTCTTTCTTTGCCAGCTGTTGACATCCTCCTCAGCCCAGAGACCTGGCCCCCGAGGACCGCAGGGCCTGCCAGGACCTCCGGGACCCCTAGGGAAGGACGGCACTGATGGCAAACCTGGTCCACCTGGACTGCCTGGCAAGCCTATCAGCTCCAAAGAGGTACCCTCAAAAAGGGACCCAAAGGGAAAGCAGGGGCACCTGGGTCTGCTGGAAATGCAGGGCTGCCTGGACTTCCAGGAGTGGATGGGGATGCAGGACCTCCAGGCCCAGGGGGACCTCCGGGCAGAGGGAAACCTGGACCACCAGGCGCACCAGGAGCCACTGGGTTGTCAGGAGGATTGGGGCCACAGGGGCCGACGGGACCTGAAGGGCCTTCTGGTCCTATTGGTCTTCCCGGGCCTCCTGGTCCCCCAGGTTTCTCCGGGGCTTTCCCTGATGGAAATGGCGATGCTTTGTGTCCTGCTATCTGTCCTCCTGGCCCCGCTGGGCTTCCAGGAATGCCAGGGTTCAAGGGTCACACCGGCCACAAAGGTGACAAAGGAGAAGCTGGAAAAGATGGAGAAAAGGGAGACCCAGGCCCTCCAGGTCCACCTGGCATTCCCGGAACAGTTGGCCTCCagGGTGATGCTGGAGAGAAAGGACCAGAAGGGTTCAAAGGACCAAAGGGTGACATTGGAAAACCAGGTCCGAAAGGAGTGCCAGGGGGATCTGGGCCTAAAGGAGAGCCAGGCATTCCTGGTCGGGATGGAAAAGATGGGACTCCGGGAACAGACGGAGAGAAAGTATGTCATCTTTTATCACGGAATTTGTCCGGTGTCTGTAGAGGTGGGTGCTGATGTTATTAACGGGTTCTTCTCTGGTTTCAGGGGGATGCCGGGCGACCTGGAGTCCCAGGGGAGAAAGGTCCCAATGGCCTTCCTGGATTACAAGGAAAGGCTGGAACCAAAGGATCGAAAGGGCAGAGTGGTGACCAAGGAAAAAGTGGAGAGCCCGGCCCGTCTGGAGAGCCAGGTATTCCAGGAGGGGTTGGACCTCAAGGAGATATGGGACTTCAAGGGGTTAAAGGCTTCCAGGGACCAAAGGGCGCTCTGGGAGATGCAGGGCTTCCTGGGCCGACAGGAATCCGCGGATTATTTGGTGAAAGGggtCCAGTCGGAGCTTCAGGCTCCAAAGGAGACCCAGGTCTCGCTGGAAGTGATGGCCTTCCTGGAGAAACAGGAGAGCCGGTATGGTCCATTTGGTCCTGTTGGACAAAAAGGAGAGcctGGCAAACGTGGTGAGCTTGGTCTGAAAGGATTCACCGGCCCTCAGGGGGAGACCGGGGCCAGAGGGGCTCCTGGGAAACCAGGCTTCATGGGCTTCCAGGGAGAGCAGGGCCTGCCGGGTATCGCAGGAAAAAATGGCGTTCCTGGTAAACTAGCAAGTGAACAGCACATCCGGGAGTTGTGTGCTGGAATGATCGATGGAGGCCCTTGGCCCCTGGCATGGTGGGTCGTCCCGGTCCTGCTGGGCCCCCAGGGCAGCCAGGAGAGGCCGGGTCAATGGGACACCCAGGAACACGCGGACCACCCGGATACAGAGGACTTCCCGGAGAACTGGGAGACCCCGGCCTCAGAGGCGACGTTGGTGAGGCAGGTGACAAAGGGCCGGTTGGCAAAGCTGTTGACGGACCTACAGGAGACCAAGGGCATCAAGGGCTTCCCGGGGTGTCTGGAGTCAGCAAAGACGGTCGCGATGGTGCCCCGGGTGATGCAGGCTATCCTGGCGAGGCTGGCAGGGTGGGTAGGACTGGCTCTCAGGGGTCCCCTGGAATCTGTGACACGTCGGCCTGCCAGGGAGCTGTGGCGGCAGGAAAATCAACCAATCCCAAGAAGCATTAAACCAGGAGGAGACTCAGATATTTTTTTGGAAGGACGTGACTGAATAtttaaggaaaagaaaagacaatgggaaggaaggaagagaaACTACGAAGAAATCAGACTTTACCAAGACGAACGGACAGAGGTCACAGACATACACGATCGAGCGCACGAACACCGGTATCGCTCCTGACAAcgaaattttaaataaaacagtctCCCATGAATGGCTTTACTGAAAAGGTGcttaaagacatttttttttaatgtatgttttttttttccctccccatGACATCCAGCTACACACCCCTCCTGCAAAACAGAGGCCCTTCTACCTACAGTAACTTTCTGAATGTCTTGGCAGTAGTTTTAGAGCACGAATGCAGCTCTACGCATTTGTGGTCCATGGTGTCTTCTCTTCAGGCAAGCTTACCTCACTAAATGTTTCTCATAATACAATTTCAGTGCAAGAGCTGTAATTCTGTGAAGGggctttgtatatatatataaatatcacaaaATGTGTTCAGGTATTTTGTATAGTTCAGTATACCTGGAATTAGGTCCATTTTCAACACTTGCTAGTATAGACATTATTTGAAGCAGcttgtgaagtgtttttttcattttgtttttctaaaagtgttttatactttttaattatttgttaaacTCTAAGATCAAACTCCCCTTCAAACatgtaaagaaataataataaaataaaaaggctatGTGGATGCTACAGCAACTGTTACAATGACGCAGTCCTTAGTGAAATGTGTGCTTACTCCTCTCCGTTTTACTCCTCTTAAATGAAAATCCACATCCACTATGTAATGGTGCTGTAACTATTAAATACACATGATTTgaaatactatttattatttgtgggTGACTGTTGTATGTATAGTAAAGCGCTATAGCACCATATGTTGtaagaaataatgaataaagcCACTTTTCAGTAAATCGCTA

Function

GO: NA

KEGG:

id description
K08131 COL9A; collagen type IX alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36208 lncRNA downstream 44067 43996118 ~ 44000866 (-) True G28914
TU36196 lncRNA downstream 148982 43894179 ~ 43895951 (-) True G28907
TU36187 lncRNA downstream 151125 43863607 ~ 43893808 (-) True G28900
TU36079 lncRNA downstream 461520 43510760 ~ 43583413 (-) False AMCG00008144
TU35870 lncRNA downstream 946460 43097198 ~ 43098473 (-) False AMCG00008124
TU36272 lncRNA upstream 415225 44487210 ~ 44487419 (-) True G28973
TU36273 lncRNA upstream 594358 44666343 ~ 44666577 (-) True G28974
TU36277 lncRNA upstream 607831 44679816 ~ 44680042 (-) True G28977
TU36278 lncRNA upstream 609440 44681425 ~ 44681769 (-) True G28978
TU36275 lncRNA upstream 610452 44682437 ~ 44688175 (-) True G28976
AMCG00008151 mRNA downstream 72633 43962078 ~ 43972300 (-) True AMCG00008151
AMCG00008152 mRNA downstream 122905 43897216 ~ 43922028 (-) True AMCG00008152
AMCG00008148 mRNA downstream 368556 43666568 ~ 43676377 (-) True AMCG00008148
AMCG00008147 mRNA downstream 488900 43533559 ~ 43556033 (-) True AMCG00008147
AMCG00008144 mRNA downstream 514846 43512861 ~ 43530087 (-) True AMCG00008144
AMCG00008158 mRNA upstream 1678 44073663 ~ 44082848 (-) True AMCG00008158
AMCG00008164 mRNA upstream 649754 44721739 ~ 44740915 (-) True AMCG00008164
AMCG00008165 mRNA upstream 677105 44749090 ~ 44752458 (-) True AMCG00008165
AMCG00008163 mRNA upstream 704668 44776653 ~ 44778533 (-) True AMCG00008163
AMCG00008166 mRNA upstream 706751 44778736 ~ 44786186 (-) True AMCG00008166
TU35782 other downstream 1280279 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 2195043 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 2843108 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 3027685 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 4540341 39500321 ~ 39504592 (-) True G27861
TU36269 other upstream 345889 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 1978710 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 2408961 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 3641949 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 4051940 48123925 ~ 48124682 (-) True G29544

Expression Profile