RNA id: AMCG00008160



Basic Information


Item Value
RNA id AMCG00008160
length 753
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00008160
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44259975 ~ 44268323 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGATATGGAAGGGAATGACTTGCTGGCAGAATTGACAGACCATCTGCAGTTCATCGACCTGCTGAAGAGGATGCTGAAGATGGATCCAGATGACAGGATTACCCCCATCCAAGTCCAGAACCATCCATTTGTCACCTTGACACATCTATGTGAGTTCCTCCCCAGCACATATGTCATGTCTTGTGCCCAGGACATGGAGGTCTGCTATAGTCGAGTCAATACCAACACAGCCCCCAGAACGACCTCCAACAGTCAGCTCAACACTGCCCCCAACACGACATCCAACAGCCAGCTAAACACAGCCCCCGACACAACATCCAACACCCAGCTCAACGCAGCCCCCAACACGACGACCAACAGCCAGCTCAACACTGCCCCCAACACAACATCCAACAGCCAGCTAAACACAGCCCCCGACATGACATCCAACAGCCAGCTCAACGCAGCCCCCAACACGACGACCAACAGCCAGCTCAACGCTGCACCAAACCAGGCACAGCAACTCATGGCTGCAGAGGGGAACAAAGGGCACCGCAGACAGATCATTTTGCTGATGCTCCAGGCGAAATCGGCAGCAAAGGGCCTGAATTCTGCAACTCAGCAGCGGTTTAAGTGGGTGAGCAGACCAAGACAGCTTATGAGGATGGTGCTTGCTGACATGAGCCGGCCCTTTGACAGAATAAACCATCAGCTTCTTCTTAATATCCTGATCTCCTACGGGATTTACACAACTGCTCTCTATGTTGCCTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU36226 lncRNA upstream 203367 44053965 ~ 44056608 (+) True G28931
TU36139 lncRNA upstream 364024 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA upstream 364024 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA upstream 364847 43894185 ~ 43895128 (+) False G28862
TU35900 lncRNA upstream 1058772 43177802 ~ 43201203 (+) True G28678
TU36252 lncRNA downstream 423218 44691541 ~ 44749908 (+) True G28956
TU36298 lncRNA downstream 500354 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA downstream 527601 44795924 ~ 44798463 (+) True G28995
TU36485 lncRNA downstream 1085393 45353716 ~ 45354079 (+) True G29148
TU36491 lncRNA downstream 1109688 45378011 ~ 45378353 (+) True G29153
AMCG00008157 mRNA upstream 128256 44106455 ~ 44131719 (+) True AMCG00008157
AMCG00008153 mRNA upstream 215165 44040778 ~ 44044810 (+) True AMCG00008153
AMCG00008156 mRNA upstream 223848 44034386 ~ 44036127 (+) True AMCG00008156
AMCG00008155 mRNA upstream 225635 44001734 ~ 44034340 (+) True AMCG00008155
AMCG00008154 mRNA upstream 260142 43976301 ~ 43999833 (+) True AMCG00008154
AMCG00008167 mRNA downstream 309049 44577372 ~ 44653905 (+) True AMCG00008167
AMCG00008162 mRNA downstream 397313 44665636 ~ 44683700 (+) True AMCG00008162
AMCG00008161 mRNA downstream 475307 44743630 ~ 44748571 (+) True AMCG00008161
AMCG00008169 mRNA downstream 484722 44753045 ~ 44760831 (+) True AMCG00008169
AMCG00008168 mRNA downstream 497822 44766145 ~ 44770112 (+) True AMCG00008168
TU35919 other upstream 958553 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 1110932 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 1151733 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 2266598 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 4012737 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 754825 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 881106 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 1072273 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 1172190 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 1999568 46267891 ~ 46268327 (+) True G29353

Expression Profile