RNA id: AMCG00008161


Basic Information

Item Value
RNA id AMCG00008161
length 2255
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00008161
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44743630 ~ 44748571 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTGCTGGGGTCTGTGTGAGTTTGGTGAGAGTGAAAGGTTGCACTAGGAGTCACGATTTTGTCATTTTCCACATCGTAAGCAAAGAAGGATCGAGAGTTTCGATTAAGAAACCAGTTAACCCAACCCAATCCAAGCCGGCCATGAGCTCCGGGACGCCATACATCGGTAGTAAGATCAGCCTGATATCCAAGGCCCAGATCCGGTATGAGGGCATTTTGTACACCATCGACACGGAGAACTCGACGGTGGCCTTGGCCAAAGTGCGGTCGTTTGGAACCGAAGGCCGGCCCACTGAAAGACCAGTGCCCCCCAGAGACGAGATCTACGAGTACATCATCTTCAGGGGAAGTGACATTAAAGACATAACGGTGTGCGAGCCGCCGAAACCGCACCTTGGTTTACCCCAGGATCCGGCTATTGTGCAGTCATCTCTTGGTGGTTCTTCAGCCTCTTACCAGCCCCAGGCTTCCTACAGCCCTTACAGAAGCATGATGTCCTCCTACAGCCAGTTGGCAGCCAGCTCTCTGCTCAATCAGCAGTATGCTGCAGCGCTGGGGGCAGGTCTTCATAGCCTGCAAGTGAGAAGGGCCCCTATGGTAGAGCAGGCTGTACAAACTGTCCCAACTGACAACTCTGCACAGAAAAagcccccaccaccaccaccagcagcacCGCTGCCCGGGGGGGAACCTACCAGGGCCTCCCAGCTACCGCCTCAACGTGCTGTAGCCCAGGATCTGGTGCCAGGCAATGATGTGAATAGAAGACCCCAGAGACGGAGACAAGCAAACCGGAGGTCCAGAAACCGTGGGAAAGGACAGATTCTGGTGGGAAGCTCAAAGCCCACTACCCTCCAGTTTGATGCAGACTTTGATTTTGAAAGTGCAAATGCTCAGTTCAACAAGGATGATCTTGAAAGGGAGATCCAAAACAAGCTGAACATTAAAGATGCAAAGACTGACCAAGAGGAGAAAGGGGACTCGGGGGTTGACACTCAAAATAGTGAGGGGACTGTGGAAGAGGATCCCTTGGGGCCAAACTGCTACTATGACAAAACCAAATGCTTCTTTGACAACATTTCCTCTGAGCTGAAGTCCAGACGAACTACGTGGGCAGAGGAGAGGAAGCTCAATGTGGAGACTTTTGGGGTTCCTGGCAGGTTCCTGAGGGGACGTGGGTTCAGAGGGGGATTCAGAGGGCGTAGAGGGCGAGGGGCAGCTCAGCGTTTACCCAGCATGCAAAAAGTGGGCAGTGGGAGGCTATAAAGAGTCCTTGGATGCCAGTGATTTGAGTTTACAGATGTGGTTGCTGGTGCAAATTCTCCCAACTACCATCCAAGACcaattgttttttgaaatgtttgcttTCCAGTGATTTGGATTAGTTTCTACTGGTTACACTATAGACTGCCATATTGAAGAGCCCCAATAGTCCTTATtcatcttagtttttttttttttttcccctctttatAATTGACTAGGAAGTGAATCTCAAGCGTTCTTGCTTTAACTTGCAAGTTTTTCCAAAATTACGACTCTTGAGCTTTTATTTCCAATAGAATTTTTtagaagcacttttttttttttaaacttgtattacTCAACATTTTTGCCTTGGACAGTGAAAGGATACAAACTACATTCTTTATCTTCATTCTATGATTAAATCTTGCCATTCGCTTCCTAaacaattttcaaaatattctCTTAAATGTCTGTAACTGCATAAAAAAGGCAATACTTGATCATCCTAAATTTACTGAACCttatttaatgcattgttttcaattttgtaaatagaaatgtgtatataatgtgGAACTTGAGCAATGGAACTTGTTAAAGATGGTTAAGACAACCTGAATGCATGTTGCTTGAAAAAGTGGGTGTCTTCATTCAGGACAGTTTGTATTAGTTTGGATTATACATTGGGAGATttcttttgtgcattttttttttttttttttttaaacattctgGAAATTGAACCTGAACCACTTTGTAACAGTCAGGAaatctttaatgtttttgatcCATTGCcaataaaactattttgttgCGTTAACTGAACATCTCGGTGTGTGGCGATTTTCAGAATGTATGATTCCCTTCAATGCTGTGCTGAAGGTCTTGCACAATTAAGGTCTGAATGTAAAGGATTCCAGTTTGTCTGTCAAGGTAATGTAAAATAACTGCACATCCATCTAAACTGTCAAGCTTTCCATTTACcttttaaccatttaaaaaaaaa

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18749 LSM14, RAP55, SCD6; protein LSM14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36226 lncRNA upstream 687022 44053965 ~ 44056608 (+) True G28931
TU36139 lncRNA upstream 847679 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA upstream 847679 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA upstream 848502 43894185 ~ 43895128 (+) False G28862
TU35900 lncRNA upstream 1542427 43177802 ~ 43201203 (+) True G28678
TU36298 lncRNA downstream 20106 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA downstream 47353 44795924 ~ 44798463 (+) True G28995
TU36485 lncRNA downstream 605145 45353716 ~ 45354079 (+) True G29148
TU36491 lncRNA downstream 629440 45378011 ~ 45378353 (+) True G29153
TU36579 lncRNA downstream 791198 45539769 ~ 45542206 (+) True G29223
AMCG00008162 mRNA upstream 59930 44665636 ~ 44683700 (+) True AMCG00008162
AMCG00008167 mRNA upstream 89725 44577372 ~ 44653905 (+) True AMCG00008167
AMCG00008160 mRNA upstream 475307 44259975 ~ 44268323 (+) True AMCG00008160
AMCG00008157 mRNA upstream 611911 44106455 ~ 44131719 (+) True AMCG00008157
AMCG00008153 mRNA upstream 698820 44040778 ~ 44044810 (+) True AMCG00008153
AMCG00008169 mRNA downstream 4474 44753045 ~ 44760831 (+) True AMCG00008169
AMCG00008168 mRNA downstream 17574 44766145 ~ 44770112 (+) True AMCG00008168
AMCG00008170 mRNA downstream 24497 44773068 ~ 44774474 (+) True AMCG00008170
AMCG00008171 mRNA downstream 197181 44945752 ~ 44949206 (+) True AMCG00008171
AMCG00008179 mRNA downstream 249658 44998229 ~ 45012622 (+) True AMCG00008179
TU35919 other upstream 1442208 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 1594587 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 1635388 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 2750253 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 4496392 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 274577 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 400858 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 592025 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 691942 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 1519320 46267891 ~ 46268327 (+) True G29353

Expression Profile