RNA id: AMCG00008163


Basic Information

Item Value
RNA id AMCG00008163
length 1203
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00008163
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44776653 ~ 44778533 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGTCTTCCCTGACATTATGGACGTAAAGAACGGGACAGAAGCATTTGGAAAGCATGCACATGTGCAGGACCGGCGTTATCCAGTGTTGTGCACCATACTGCTCTTGTTCCTGGTGGCTCTCCTGGTCGTGGTGACCGTTTTGGGAAACGCGCTGGTGATGCTGGCTTTCGTGGTGGAGAAGAGTCTCCGCACCCAGAGCAACTTCTTCTTGCTCAACCTGGCGATTTCTGATTTTTTAGTAGGAGCATTTTGCATGCCCCTGTACGTCCCCTACTTGCTCACAGGGCGATGGTCTTTTGAGAAGAGTCTCTGCAGGCTGTGGCTGGTGATGGATTATCTGATGTGCACCTCTTCTGTGTTCAACATCGTCCTCATCAGTTACGACCGCTTTCTGTCAGTCACTCGACCAGTTGCATACAGGACCCAGCAAGGCAAGGTGTCTCAGGCTGTAGCAAAGATGGCTCTCGTTTGGTTTCTGGCTTTCTTGCTGTATGGTCCTGCTATCATTGCCTGGGAGCACATCGCCGGGCACAGCATTGTGGGAAACGAACAGTGCTACCCTGAGTTCTACTTCAACTGGTATTTCCTCATCACGGCATCCACTGTGGAGTTCTTCATGCCCTTCATCAGCGTGACCTTCTTCAACGTGAGCATCTACCTCAGCATCCGCTGTCGTGCCCGCAGCCGCAAGAAACTGGTCAAGGAGATGACAGGTGGGCCAACGGTTCAGGGCAGAGGAGCCACCCTGGACCATCTCTTGAAAGCAGTGGTGATGGTAGTGGGACTGGAGGGCCAGACTCACCTCATCAAACCCAGTGCCGAGACCCCGTCAGCCCCAGACACTAGAGAGTGCGCTGCTGGCGAGACCACCCAGACTCCAGCCTGCTCGGAGAACCATGTGGAAACTTTTTCGCCCACCAGTGCACAGCAATCCAGGCTGCAAAGAGACAAGAAGGTGGCCAAATCCCTGGCCATCATCGTCTGCACATTCGGAGTCTGCTGGGCTCCCTATACTTTGCTTATGATCATCCGTGCAGCTTGTAACGGCCAGTGTGTCCCCACATATTGCTACGAAGTTTCCTTCTGGCTGCTGTGGCTAAATTCAGCCATAAATCCTTTCCTCTATCCGCTGTGCCACAAAACCTTCAGGAAGGCCTTCAAAAAGATGCTTTGTTCAATGAaattcaattcattttaa

Function

GO: NA

KEGG:

id description
K04151 HRH3; histamine receptor H3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36275 lncRNA downstream 88478 44682437 ~ 44688175 (-) True G28976
TU36278 lncRNA downstream 94884 44681425 ~ 44681769 (-) True G28978
TU36277 lncRNA downstream 96611 44679816 ~ 44680042 (-) True G28977
TU36273 lncRNA downstream 110076 44666343 ~ 44666577 (-) True G28974
TU36272 lncRNA downstream 289234 44487210 ~ 44487419 (-) True G28973
TU36401 lncRNA upstream 255912 45034445 ~ 45036413 (-) True G29081
TU36439 lncRNA upstream 370968 45149501 ~ 45151327 (-) False AMCG00008192
TU36509 lncRNA upstream 575274 45353807 ~ 45354086 (-) True G29170
TU36523 lncRNA upstream 641057 45419590 ~ 45420462 (-) True G29182
TU36533 lncRNA upstream 683246 45461779 ~ 45462530 (-) True G29192
AMCG00008165 mRNA downstream 24195 44749090 ~ 44752458 (-) True AMCG00008165
AMCG00008164 mRNA downstream 35738 44721739 ~ 44740915 (-) True AMCG00008164
AMCG00008158 mRNA downstream 693805 44073663 ~ 44082848 (-) True AMCG00008158
AMCG00008159 mRNA downstream 704668 44044933 ~ 44071985 (-) True AMCG00008159
AMCG00008151 mRNA downstream 804353 43962078 ~ 43972300 (-) True AMCG00008151
AMCG00008166 mRNA upstream 203 44778736 ~ 44786186 (-) True AMCG00008166
AMCG00008174 mRNA upstream 17393 44795926 ~ 44814080 (-) True AMCG00008174
AMCG00008173 mRNA upstream 73756 44852289 ~ 44872215 (-) True AMCG00008173
AMCG00008172 mRNA upstream 100477 44879010 ~ 44883212 (-) True AMCG00008172
AMCG00008175 mRNA upstream 172865 44951398 ~ 44963177 (-) True AMCG00008175
TU36269 other downstream 358457 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2011999 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 2926763 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 3574828 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 3759405 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 1272162 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 1702413 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 2935401 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 3345392 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 3502809 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile