RNA id: AMCG00008165


Basic Information

Item Value
RNA id AMCG00008165
length 858
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00008165
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44749090 ~ 44752458 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTTACGACCGGGCGATCACCGTCTTTTCCCCGGACGGGCATCTGTTTCAGGTGGAATACGCGCAAGAAGCCGTAAAGAAGGGATCCACAGCAGTCGGAGTAAGAGGCAACAACATCGTTGTGCTGGGAGTGGAGAAGAAGTCAGTAGCCAAGCTGCAAGACGACCGGACTGTGCGTAAAATCTGCGCCCTGGATGACAATGTTTTCATGGCTTTTGCCGGGCTCACAGCGGATGCCAGGATTGTTATAAACAGAGCCCGGGTCGAGTGTCAGAGCCACAGACTGACTGTGGAGGACCCCGTCACAGTCGAGTACATCACACGCTACATTTCCAGCCTCAAACAGCGTTACACTCAGAGCAACGGGCGCAGGCCTTTTGGGATCTCCTCCCTCATCGTGGGTTTCGACTTCGATGGATCACCAAGACTGTACCAGACTGACCCATCAGGAACGTATCACGCTTGGAAGGCAAACGCCATCGGGAGATCTGCGAAGACCGTCAGAGAGTTTCTGGAAAAGAATTACAAAGAGGAAGACATGGACACGGACAAAGAAACCATAAAGCTTGCAATTAGAGCTCTTCTTGAGgttGTCCAATCTGGAGGCAAGAACATTGAGCTGGCAGTCATGAGGCGTGATGAGCCACTAAAGattttaaatcaaGAGGAAATTGAGAAGTACGTCTcagaaattgaaaaagaaaaggaagaaaccgaaaagcaaaagaagaaaaccACAACATAGATCACAccgttttcccttttatttggTGGGAAGCCATGAAAACTACAAAATTTGCAGTTTTTAGAAATACAAGTGCTTTACTCTTGCAATAAAAGTCAGTCTAAACATTTA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02731 PSMA7; 20S proteasome subunit alpha 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36275 lncRNA downstream 60915 44682437 ~ 44688175 (-) True G28976
TU36278 lncRNA downstream 67321 44681425 ~ 44681769 (-) True G28978
TU36277 lncRNA downstream 69048 44679816 ~ 44680042 (-) True G28977
TU36273 lncRNA downstream 82513 44666343 ~ 44666577 (-) True G28974
TU36272 lncRNA downstream 261671 44487210 ~ 44487419 (-) True G28973
TU36401 lncRNA upstream 281987 45034445 ~ 45036413 (-) True G29081
TU36439 lncRNA upstream 397043 45149501 ~ 45151327 (-) False AMCG00008192
TU36509 lncRNA upstream 601349 45353807 ~ 45354086 (-) True G29170
TU36523 lncRNA upstream 667132 45419590 ~ 45420462 (-) True G29182
TU36533 lncRNA upstream 709321 45461779 ~ 45462530 (-) True G29192
AMCG00008164 mRNA downstream 8175 44721739 ~ 44740915 (-) True AMCG00008164
AMCG00008158 mRNA downstream 666242 44073663 ~ 44082848 (-) True AMCG00008158
AMCG00008159 mRNA downstream 677105 44044933 ~ 44071985 (-) True AMCG00008159
AMCG00008151 mRNA downstream 776790 43962078 ~ 43972300 (-) True AMCG00008151
AMCG00008152 mRNA downstream 827062 43897216 ~ 43922028 (-) True AMCG00008152
AMCG00008163 mRNA upstream 24195 44776653 ~ 44778533 (-) True AMCG00008163
AMCG00008166 mRNA upstream 26278 44778736 ~ 44786186 (-) True AMCG00008166
AMCG00008174 mRNA upstream 43468 44795926 ~ 44814080 (-) True AMCG00008174
AMCG00008173 mRNA upstream 99831 44852289 ~ 44872215 (-) True AMCG00008173
AMCG00008172 mRNA upstream 126552 44879010 ~ 44883212 (-) True AMCG00008172
TU36269 other downstream 330894 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 1984436 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 2899200 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 3547265 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 3731842 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 1298237 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 1728488 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 2961476 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 3371467 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 3528884 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile