RNA id: AMCG00008167


Basic Information

Item Value
RNA id AMCG00008167
length 1587
RNA type mRNA
GC content 0.54
exon number 11
gene id AMCG00008167
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44577372 ~ 44653905 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGAAACATACACGCTATGGTTTTCAGACGGATGGGAAGTTATATGGGAACTGGTCCTGTGCCAAGCCTCAGACCAATGGAGGATtgGTAATGAAGGAGCGGAGAGAAATCCATTTAGATAGGGAGCAGCTGCGTTTAACAATGAAATTCAACGACTGCCAAGAGAACAAGGATGTTGGGTTTGAGAGCAGCGACCCGAACTTCAACGTGCGGACAGATGGCTCGATCTACACCGAGCACGGGGGCGCCAACCTGTCGGAGCCAGTCCAGTTCATGGTGACTGCCAAGAGAATGCCAGACAAACAGATGTGGGAGACGACCGTCAAACTGGCCTTGGTGGGACAAGCAAGGCCTTGGACTACTGCAGGCCAGCTAATAGGGAAAGAGAAGACACCCCCAGAGTCAGATCCGCAGCCGAGCGTTACCCTGTTTCCGTGGAAACAACAGCCGAGCTCTAATGGGCTGCGACGACAGAAACGAGATTGGGTCATCCCACCAATCAATGAGCCAGAAAATTCCAGAGGGCCCTTCCCCCGCATGCTCGTCAGATGTCCTCTACCTTCTGGCCATTGTCACTTCTGCTGTCAGCAGCCAGCCACGTCTAACCTGTGGGGATGTTCATCCCGGTGCCTGGTCATCCCCACAGACCTCGGGCTGAAACCATTCAGGGCTGCTGCCGCTGATGTCTGTCCTACTATCCGCTCAGACCAAGACCGAGAGATCCAGATCCGCTACAGCATTACGGGGGTGGGCGCAGACCAGCCCCCAATGGAGGTGTTCACCATCGATCCGGTGGCGGGGAAAATGTACGTTACCAAACCTTTGGACCGAGAAGAAAGAGCATCCTATCACCTGAGGGCCCACGCTGTGGACATGAATGGCAACAAGGTGGAGAACCCCATCGACCTCTATATCTATGTCATAGACATGAATGACAACCGGCCAGAGTTTCACAATCAGGTCTACAACGGATCTGTGGATGAAGGATCCAAACCAGgCTCCTACGTCATGAAGGTGACCGCGAATGATGCGGACGATGATACCACCGCCAACGGAATGGTCCGCTACAGGATTTTGTCCCAGTCTCCTCACAGTCCCATCCCCAACATGTTCACCATCAACAGTGAGACGGGAGACATTGTCACAGTAGCGGCTGGACTAGATAGAGAGAAGGCAACCTGCATTGATACCAATTGGGCCATGCTGCAAGGGTCACAACAAGACATCTTCAGGAAAGTCTCCCAGTACACCGTCATCATTCAAGCCACCGACATGGAAGGCAATCTGAACTTTGGGTTGTCCAACACCGCCACCGCCATTATCTCTGTGACAGACGTCAACGATAACCCTCCGGAGCTGACCGCCAGTACAGAGCACAGGAGCATGCAGGCAGGCAGCAGCATCCTGGTGATAGCAGGGAATGAGAAAACTCAAAAGGTAATTTGTTATTGTGATGGATTAAATGAGACAGGCGGCCATGCCTGGCAAGCGACTCGAACGCTTACCCTCCTGAGGGGCACCAGGGCCGGGAACAACAGAGCGGTGCGTGTGAGGGGAGTGGTGGGGGGCGAGAGCGAGGCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36226 lncRNA upstream 520764 44053965 ~ 44056608 (+) True G28931
TU36139 lncRNA upstream 681421 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA upstream 681421 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA upstream 682244 43894185 ~ 43895128 (+) False G28862
TU35900 lncRNA upstream 1376169 43177802 ~ 43201203 (+) True G28678
TU36252 lncRNA downstream 37636 44691541 ~ 44749908 (+) True G28956
TU36298 lncRNA downstream 114772 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA downstream 142019 44795924 ~ 44798463 (+) True G28995
TU36485 lncRNA downstream 699811 45353716 ~ 45354079 (+) True G29148
TU36491 lncRNA downstream 724106 45378011 ~ 45378353 (+) True G29153
AMCG00008160 mRNA upstream 309049 44259975 ~ 44268323 (+) True AMCG00008160
AMCG00008157 mRNA upstream 445653 44106455 ~ 44131719 (+) True AMCG00008157
AMCG00008153 mRNA upstream 532562 44040778 ~ 44044810 (+) True AMCG00008153
AMCG00008156 mRNA upstream 541245 44034386 ~ 44036127 (+) True AMCG00008156
AMCG00008155 mRNA upstream 543032 44001734 ~ 44034340 (+) True AMCG00008155
AMCG00008162 mRNA downstream 11731 44665636 ~ 44683700 (+) True AMCG00008162
AMCG00008161 mRNA downstream 89725 44743630 ~ 44748571 (+) True AMCG00008161
AMCG00008169 mRNA downstream 99140 44753045 ~ 44760831 (+) True AMCG00008169
AMCG00008168 mRNA downstream 112240 44766145 ~ 44770112 (+) True AMCG00008168
AMCG00008170 mRNA downstream 119163 44773068 ~ 44774474 (+) True AMCG00008170
TU35919 other upstream 1275950 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 1428329 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 1469130 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 2583995 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 4330134 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 369243 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 495524 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 686691 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 786608 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 1613986 46267891 ~ 46268327 (+) True G29353

Expression Profile