RNA id: AMCG00008168


Basic Information

Item Value
RNA id AMCG00008168
length 2440
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00008168
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44766145 ~ 44770112 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGACGCGGCATGCTTTCGTTAGGTAagtaactttaaaagaaatatgcATAGATTGAATTTAAACGTTTTACATAAACGTAAACTAAACCGAGAcgcaaataaaataataatattgtacagCTGATCAAATGAGAAGCACTACTGAAAATATGATCTAGCTGCATATTTCGTATGTTGTTAAACACAGTAACCTTCGGTAGCAATGGTCCCAAACCTCGAAACACTATCATTCGCCGCAATTCGCTGAAACAATAGGGTGTTAAACTTGTGTCTGTCGGCTATGAATGCGTTTAAATAAGCACATTATCTGCGCTGTTTCCACAGACAAGAAGactattaattatatattataatgattcACTCATAAGAATGAACCATCATGTCTCCCAGTGCAGACAGCATTAGAACAGACGAGGCTCGAAATCGCAACTGTATCCAACTATAATTGTATTTCAGCCAAagacgttattattattaacacattatcaTTCCGTAAGAGATGGATGTAACTTTCTTTGTTCTAAGGCGTAGTAGAGTAATAGTAACCATAaggtgctttatttaatttgaaactgatGGACCTGGACATAGTTCTCCAGGAATAAGTTAATATAGGTGCTCGCACATTGTGCTGTTGCTGTGACTGAGTTGCTTTCCCAGGTCATGATGCTGAATTCCCAGGGTTCAATAGTCAGGAGATGGATCTTGCAAGAGGCTGTCCGCCTGTACAGTAAAGTGCTGGGCAGTGGGAGGTTGGCACCTGCGCTGTCTGTATGGGCGAGTCGCTGTGCCCTGGGGCACTTCTCCACCAGCCGCTCCCAGTATGCCAAGAGCAGGGCATTGAAACCCAAGAAAGCCATTTCCGAAAAAAAGCTGACTCGCTACTTCGTTGACCACAGGAGAGTGAATCTGACCGCGGGGTCGGGAGGCAAAGGAGCGTGCACTTTCCTCAGCGAACCCAGGAAGGAGTTTGGAGGCCCAGATGGTGGAAATGGAGGCGATGGAGGAGACGTTGTCATAAAAGTCGACCAGCAGGTGAAATCCCTGGCACTGGTGTTTCCCCTCTACCGCGGGACGGACGGAGATCCGGGGGGCAAAAAAAATTGCTATGGCCGGAACGCAGAGACCACCTACATTAGAGTACCTTTAGGAACCATAGTGAAGGAGAACGGGAAGGTGGTGGCTGACCTGTCCACCCAGGGGCAGGAGTATGTCGCAGCATACGGTGGAGCGGGGGGCAAGGGCAACCGCTTCTTCCTCTCCAACGAGAACCGGGCGCCGATGACTGCCACGCCAGGGGAGCCCGGGCAGCAGCGGATACTGCACTTGGAGCTGCGCACCATGGCACACGCAGGCAtgGTTGGATTTCCAAATGCTGGGAAGTCTTCCCTTTTGCGCGCAATCTCCAATGCTAAGCCAGCTGTGGCTGCTTATCCCTTCACTACACTAAACCCCCATGTTGGCATTGTGAAGTACCAGGACCATGAGCAAGTGGCAGTTGCTGACATCCCAGGGATCATCCGAGGGGCGCACGTGAACCGGGGCCTCGGGATCTCATTCCTGCGGCACATCGAGCACTGCCGCTTCCTGCTCTTTGTCTTGGACCTGTCGGATCCGGAGCCCTGGGCGCAACTCCAGGACCTGCGTTTCGAGCTGGAGCAGTACGAGCCGGGCCTGTCCGAGCGGCCGCAGGCCATCGTGGCTAACAAGGCGGACCTCCCGGAGGCCCTTGCCAACCTGGCCGCCCTGAGGAGCCGCGTGGCACAGCGGGTCATCCCCGTGTCAGCACTCACGGGAGAAAACATCGGGGAACTCATCCTGCACCTCCGGGAGCTGTACGACGGCTACCTGCTGACGGAGGAGAGAACGGGAGGGCAGCCAGTGAGGTGGTGATGTGCAGCGACTTGTCTGAGTCACAATTGCAGCCCCGTATCATTCGAGCCCACAGGCAAATGTGGTATGTGTTATTTATGGTATAggttgtttatgtatttatttatttaatctcaaaaCATCAGAAACCACCATGGAACATGCATTCTGGGCCTTTCTCTTCGTTGCAGACTGCAGGCCCGTGGCACAAACGGCAGAGGCCCACAACTGACAATAACACCGATAACACTGCAATCCTGCCGGCTCCCAGGCCCAGTTCAGACCCACGAACCCCAGCACACAATTGTGCTCTGCTCCTGGGGAATCCCCGTCACAGCCAGCTTGCAAAagtatattttcaatttcaaccacatatttatagattttttaaataattatttttctttaggaAATCTTAATTATGAAgacattttatgtttatatttgtatctcttttttttcttacaacGAGCTAAGGCATCCCAGTGTTATGTTTTGAGCAATTAAACATGcttaaatgtttatgtataatTGATATAATGAATTCAAACTGTGAACTGTATTGTGt

Function

GO: NA

KEGG:

id description
K03979 obgE, cgtA, MTG2; GTPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36252 lncRNA upstream 16237 44691541 ~ 44749908 (+) True G28956
TU36226 lncRNA upstream 709537 44053965 ~ 44056608 (+) True G28931
TU36139 lncRNA upstream 870194 43894109 ~ 43895951 (+) True G28862
TU36303 lncRNA downstream 25812 44795924 ~ 44798463 (+) True G28995
TU36485 lncRNA downstream 583604 45353716 ~ 45354079 (+) True G29148
TU36491 lncRNA downstream 607899 45378011 ~ 45378353 (+) True G29153
TU36579 lncRNA downstream 769657 45539769 ~ 45542206 (+) True G29223
TU36682 lncRNA downstream 955871 45725983 ~ 45734261 (+) True G29271
AMCG00008169 mRNA upstream 5314 44753045 ~ 44760831 (+) True AMCG00008169
AMCG00008161 mRNA upstream 17574 44743630 ~ 44748571 (+) True AMCG00008161
AMCG00008162 mRNA upstream 82445 44665636 ~ 44683700 (+) True AMCG00008162
AMCG00008167 mRNA upstream 112240 44577372 ~ 44653905 (+) True AMCG00008167
AMCG00008160 mRNA upstream 497822 44259975 ~ 44268323 (+) True AMCG00008160
AMCG00008170 mRNA downstream 2956 44773068 ~ 44774474 (+) True AMCG00008170
AMCG00008171 mRNA downstream 175640 44945752 ~ 44949206 (+) True AMCG00008171
AMCG00008179 mRNA downstream 228117 44998229 ~ 45012622 (+) True AMCG00008179
AMCG00008178 mRNA downstream 242653 45012765 ~ 45019906 (+) True AMCG00008178
AMCG00008177 mRNA downstream 253036 45023148 ~ 45036027 (+) False AMCG00008177
TU35919 other upstream 1464723 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 1617102 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 1657903 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 2772768 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 4518907 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 253036 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 379317 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 570484 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 670401 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 1497779 46267891 ~ 46268327 (+) True G29353

Expression Profile