RNA id: AMCG00008171


Basic Information

Item Value
RNA id AMCG00008171
length 1923
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00008171
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44945752 ~ 44949206 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATTCGGCTCCAGATCGTGGCAAAGAATGCCTTCCTCCAAAGAAGCGAGAGTTCCAGGCCTTGAAGCCCGCCGAACAGCGCCCCATGGATGAATTCAAGCCGCCTCCACCCCACATGAGCCGAGCTCTGGGCAAGCCAGCAGAGAGCAAGGGAACTCTGTCACATCCACGCTATGGCAAGGATCCTCTGCCACCGCCGCCGAAGTTTGTGCCACCTGATCCACCGCCTTTTCCTTTGCCCTTCTCCTTTCCCACCACACAGCCAAACCTGTTCATTTCCAACCAGATGGGAGACAAGCTCAGTCCAGGTTCGTCCTCTTGGAGGGACCAGTCTTTCAGGATGGGGGACTCTGCTGACACCAGCGGTCATTATTCACGATGGAAGCACAAAGGAGGAGCAGGGAATCCGCACCAGGACAGGGGTCACAGTTCATATCCGAGTGCTCTTCCTGCAGAGTCGAGGGACTTTTGGCCTTTCTTCAATGTCAAGCAACGCTTCAGCTCCCCCCCCTACCTGTCTCATGATCTACATTTATACCAACCACCACTATATCCCAGAGAGCACTTGCCGGACAGGAGGAAGGAGAATGGGTATGACGGGGCAGACAGCAGGCCCTCACACAGGAGGTTGCAAGGGGGTCCAGAGCCTGACTACTACAGCAAGATGGAGCCAGAGAGTCTTCATGGGGCTTGTACCAATGGAAAGAGGAGATACCTGGGTGAGCAGAGATCCCTGGGAGTGTCATCCACTAAGGATGGCTGTTTTCAGGAGGCCCCCAGCACACATTCCTCCCTTCAGGAAAAGGAACCTCAGCTGACGCTCAAGACACACCCAAGGATCAGCACAGAAGTCAAGAGTGCCAAGCAGTGTCCTATGAGTACTATGGCACAGATCTATTACAACATTCCACCTGCATATTCTGCCCTGGCACAGATGCCCCTCGCTTATCCCATTTATAGTCACCAAGGACAGGTAATGGCTTTCCCGGACTTAGGACTTCAGACGGAAGCAGCCCACAAATTAGGAATCTCAGGACATTCCCCGCTGGCAGTAGACAGGGACTCGGAGGGGCCGAGAGGAGGGAAATCTAACAGCCACGGTTCTGCCCCCTCTCCCGGAGCGCCTATTGACTATTCGAGTTCCTCGCCAGTAGGGTCTCGAGCACGAGCCGCTGCCACCACCCCAGCCGCCTCCAGCCCGTCTCCCAGCTACTCTCCCGGTCTGGCCCCCCCCGTGGTCCTACCTCACTTCACAAAGGGGTCTCTCATCGAGCTGAGCACGGGTGAGCTGAGGAAGGTGGAGGAGCTGCAGACAGAGGACTTCCTGCGCTGCGCCGTAACCAGCCCTGAGTTTCATCTGGGCTACTGCACCGTTCAGCACATTTCCCCCAGCCAGAGCCAGGGGTTCGCCCACCTGCAGGTGCTGCTGGGGGACCAGAACACTCAGGAGCTCCTCAAAGTCTTAGTTGAATACCCCTTCTTCGTCTGCAATCGAGGCTGGTCTTCGTGCTCCCCTCAGAGAACTGCCCAGCTCTACGGACTCCCCTGCCATCAGCTGGCTGCTGGCGACGTCTGCCTGGCGCTCACACCCACGCCCACCCCCGCGCCAGCACCCCCCACGGCCTCACCCACTCCATCGATGCACCATCCGAGCCAGGCCGGCGGGGGGGACTTCGCAGTGCCATCGAGCCGCTACAGGGACCCCCGCACGCAGGGCAGTATGGGGTCCACGGAGAGAACGCACAGGGTGGACAAtatgcctcctcctcctccaccacctgcCAGGCAGAGCAGGGAGCAGGCTCAGGGGACCCACCGGCCGCCCAAGACACGCAAGCGGCGGTGGTCAGCGCCCGAGCTCAGTGGACTCTCCAGTGCGACTCCAGATTTACCTCACAGTTCGAAGCACAGGAAGCAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36298 lncRNA upstream 129089 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA upstream 147289 44795924 ~ 44798463 (+) True G28995
TU36252 lncRNA upstream 195844 44691541 ~ 44749908 (+) True G28956
TU36226 lncRNA upstream 889144 44053965 ~ 44056608 (+) True G28931
TU36139 lncRNA upstream 1049801 43894109 ~ 43895951 (+) True G28862
TU36485 lncRNA downstream 404510 45353716 ~ 45354079 (+) True G29148
TU36491 lncRNA downstream 428805 45378011 ~ 45378353 (+) True G29153
TU36579 lncRNA downstream 590563 45539769 ~ 45542206 (+) True G29223
TU36682 lncRNA downstream 776777 45725983 ~ 45734261 (+) True G29271
TU36703 lncRNA downstream 938743 45887949 ~ 45888412 (+) True G29291
AMCG00008170 mRNA upstream 171278 44773068 ~ 44774474 (+) True AMCG00008170
AMCG00008168 mRNA upstream 175640 44766145 ~ 44770112 (+) True AMCG00008168
AMCG00008169 mRNA upstream 184921 44753045 ~ 44760831 (+) True AMCG00008169
AMCG00008161 mRNA upstream 197181 44743630 ~ 44748571 (+) True AMCG00008161
AMCG00008162 mRNA upstream 262052 44665636 ~ 44683700 (+) True AMCG00008162
AMCG00008179 mRNA downstream 49023 44998229 ~ 45012622 (+) True AMCG00008179
AMCG00008178 mRNA downstream 63559 45012765 ~ 45019906 (+) True AMCG00008178
AMCG00008177 mRNA downstream 73942 45023148 ~ 45036027 (+) False AMCG00008177
AMCG00008181 mRNA downstream 158207 45107413 ~ 45121480 (+) True AMCG00008181
AMCG00008185 mRNA downstream 198191 45147397 ~ 45151336 (+) False AMCG00008185
TU35919 other upstream 1644330 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 1796709 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 1837510 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 2952375 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 4698514 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 73942 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 200223 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 391390 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 491307 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 1318685 46267891 ~ 46268327 (+) True G29353

Expression Profile