RNA id: AMCG00008174


Basic Information

Item Value
RNA id AMCG00008174
length 4040
RNA type mRNA
GC content 0.39
exon number 13
gene id AMCG00008174
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44795926 ~ 44814080 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGCCCCTAGTTTCAGTTCTACTTGCACTATAGGAGAGTGAAGAATAGAAATAGTAGCCATCTGTGCCTGGGATTATAACTGAACCTGTTTTGGGTGCACAATGAAGATTGTTATTGTACTTCTCCTAACTATTTCACACTTGGACATGCTCAAAGCTTCTTCGGCAGTACTGGCACGTCAGAAGCGAAACTGGATCATAGAATCCTTTAGCATTGAGGAAGGGAATAAGAGGTCTATCCCATATGTTATTGGAAAAATTGTGCTGGAGCGTAACTACACTGTGAGGTTCACATTGACAGGCCAGGGGATAAACAAGCCACCCATCAATAGTCTTGAAATCAATCAGGACAATGGAGAAATTATGTTGATAAAAGAGATAGATTATGAAACGTACACCAAACTGGAGCTGGTATTCACAGCACTAAATCCTAATCAAGCTGTGGATACACAACTTGGAGTTCATATAAGTATCTTGGACATCAACGACAACGCACCAGTTTTTCAGTTAAATCTATACAATTTTACAGTCAAAGAATCAATGAAACAAGGAGACATACTTGCTGTCATACACGCTATGGACAGAGACATGCCCAATAGCgaGACATCTCTATATAAGATCATTGTTGAAGCTAAAGACAGGGGTGATAAAGTACAGCTGTCAAGCTCTACTACAGTTGTTCTCAATATAGAAGATGCAAATGACAATCTTCCGGTCCTTGTTAGCCCCATGGCAACTGGAAAGGTGAAGGAGAGGGAGACGAACGTCACTGTTCTGACTATAAAGGTGACCGACAAAGATAAGCCATCCACACCTGCATGGAAAGTACGATATTACATTGAGGATGACAAAGACGGCCACTTTCAGATCGACATTGATGAAAAGACCAATGATGGAATCTTGAAAGTTATTAagCCTCTGGATTTTGAAAGTGGCATCCTGTGGAACTTGTCAATCTCAGTGAAGAACGAGGAGGATTATTTCTCATGCATTGTGAAGAACAAGAAACCAAGGGGGCTGTGGGATGTGGAAATTATACATCTTGATAGAAATAAAGGGAAATCATCTATATCAGTGAATCAGCGCGTGGTCATCACTGTGGAAGATGTCAACGACCCCCCAGAATTCAAAAAAGGCACTGAGAAGGTTTACGTGAAAGAAAACGTAAAGATTGGTCATTTCCTGCAGAATGTCACTGCCACAGACATGGACAGTGGCCTTTTAAGCGTAATTACgTATAAAGTAGCAGAAGACCCAGCAGGGTGGGTGACTGTGAACTCTAAAACGGGTGCAGTTACAACAAAAGGCATAGTGGACAGAGAAAGCAAATATGTTGTGAATAATACCTATACTGTGGTTATACATGCAGTTGATAATGGAAAGCCCCCCATGACGGGCACTGTGTTGTTGAAAATCTATGTGAATGATGAAAATGACAATACGCCCACCCTGATTTCGAACATGATAGACATATGTATGGCAGATGGAGAGTCAATGAATAATATCACGGCTGAAGACATAGATGAAGGTTATAACTCTGGGCCATTCCGCTTTGAGCTGCTCAATGCGAAAGAACTGAAGGGAAAATGGAGATTGGATCCCACTTACGGGGAGACTGTTAACCTCATCAGAGGAAGCAAGGTTTTCAGTGGAGTGTATGAGCTATCTGTGAAAGTCTACGACAGACAGGATTACTGGGCTCTACACAACCTCacagtgactgtgtgcaagtgtacttCATTGCCACCCAACTGCAGACACAGGATGTCCACAGCAGCACAGATTGGAGGCGGGGCTCTAGGGATCATGTTTGTGGCCATGTTTCTATTGCTGGGTTTGGTGCTTTTGGCAAGTGTACTCTCATGCAGACACATTAAACAAAGCGCTCAAATTGATGATGATGGAGGGAACACGTTGCTGGTATTCAATACTGAAACACCTGGATCGGACTGCACAAGACTATTCACAATACAAGGTAACAAGACTGAACACCAGGATTATGACCCTCATGTGTATGCCTATGAAGTCGACTCCATAACTGATGCAGACCTAGACGCCATTTCTATCACTGACATTGAGTTTGTGCCTGACCAAATGCTACACGTGGGACCACAGTTCACTCAACTCGCCACAATTTGTATGTCCAGTATGAACAAACATTAGAACATGTCAACTGGAAAGCATTTTGTGATGATGAGACAGGCCAAGGCTAGAAAGAGGTTTCTGCATCCTGCatacaggttttttttcccatatgaagaaaaatataaaggagacattccattttaaaaaaggacagATACATAGATTATGTTTAATGGAATAAAGTGAAGAATTATCTGCCACAATAGCAGTGAAGGCAGTTGACACTATACCTCTTTATGTACAATTCTGTAGCAAATGTAGCTAAAGAAtaaaagatatcttcaaatgaagCCTTATAAAGCTCTGGAATATATACCAGGAATATATTCCAATAATAGAAAACAGTCAATACCTGCTAAGAAACAGAAGTCAAACAGATCTTGAATAATCGATTGTTGGATTTCACCAGGAGGCCCTTATATTTGATACGCACTTATGTTTAGAGTAATGCAGTGAAAAAAGACATAGCCTAAACATAAAGATTCTCCGAAAACAAAAGAGTTTTTGAATAGTTTAAAATCCCTTCAAATCTAGTGGGGCAAAACTGCCCAATATTCAAAGTGTACATAGaatgtatttgatttacttGGAAGGATGGTGTCTGGGAAGGTAGATGGTATGTAGATGGTATGTAGATGGTTTCTTTTACTTCATGATGTAGGCTCCGAATCTACAGTGCAATGTTAATGCAGGGTATATGGTGTGCTGGTAGCAGAGAgagtaaaaaaagtaaaaacaaaatggctaaTTGAATGTGAATATCCATATTTCAGAATCTGGACATTTGTAAAATTCTCTGTGTGGTAGCAGTATTAAAGGTGCTTTTCagattaatatatgtatataaatatgtacaaaatactatttaatCTACTCCCATTTTGTACAATAACAGTCATATTACATAGCAGTGCTGGGGGGAAGATATGTGTTGATCACAAGTTTCAATGGATGGCCTCATTTGTCCTGCACTAAACAATCTATTTCAATAGCCTGAAGAACCTTTTGGAGCACATCCATAACAGTGATGTGAAACTAATGCAGTTTGGTCTTGCAGTGACCAtctaatattttactttttcctgtCTTTGAAAAAAAGGGCAAAAGCCAAAAGATTTAAATTGAAAGACATGGGGATGGGAAACAGTGAATCAGTACACCACCACTAGCATTGTAATGAACAATGAGAAGGATGGAcatctacattttctttcatttgttaattactgaaattaaatgttaacatttgttattgtaaaaaaagaagaacacatGACAACATTGATCTGTGTACCCAGTAGTGGGTAAGATAATGGGTACACccacattttaacattgtttgcGGATTTTCACACCAGTGTTGGGATGTCTACATTGTGTCATGTCTaccacaaacacagacaggttCATCTCGTTTCTTAACACAAGCTCAAGGAATATTAGGCCATAGATGTCCAACAAATCAGTCAAAACAATGGAGTGACAACAGAAATAGTCTTAACAGAAAAGGACAACAAATCTGAGCTCTTTTTTCCTAGACCTGTGGTGTGTGAATGAGTTGCCTTGAATGACAGGCTAGTTGACACTTACAAAATAGTATTGGATGTCAACTTATCCCTTCTTTATGTAGGCTATGGCACTGATGGATGTACGCAACCAACTCACTTTGAGATTCTCATCAACACCCTCTGAGACTCAAATGAGAGTGAAACAACAGTTGGGTCTACCAATGTCTAGCACTgaatatatctgtgtgtatgtttatgccTTTAAGTTCATGTTTGGGGTGTTGGTTGCTTTTGTTATGAATTGTGTAACAGGCTGTGGTTTTGCAACTTCCCTGAAGGCTGTGGACAAACACATGAGCATATctataaataaagattatttaGGGA

Function

GO:

id name namespace
GO:0060113 inner ear receptor cell differentiation biological_process
GO:0035315 hair cell differentiation biological_process
GO:0042490 mechanoreceptor differentiation biological_process
GO:0042491 inner ear auditory receptor cell differentiation biological_process
GO:0009913 epidermal cell differentiation biological_process
GO:0060563 neuroepithelial cell differentiation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36275 lncRNA downstream 107751 44682437 ~ 44688175 (-) True G28976
TU36278 lncRNA downstream 114157 44681425 ~ 44681769 (-) True G28978
TU36277 lncRNA downstream 115884 44679816 ~ 44680042 (-) True G28977
TU36273 lncRNA downstream 129349 44666343 ~ 44666577 (-) True G28974
TU36272 lncRNA downstream 308507 44487210 ~ 44487419 (-) True G28973
TU36401 lncRNA upstream 220365 45034445 ~ 45036413 (-) True G29081
TU36439 lncRNA upstream 335421 45149501 ~ 45151327 (-) False AMCG00008192
TU36509 lncRNA upstream 539727 45353807 ~ 45354086 (-) True G29170
TU36523 lncRNA upstream 605510 45419590 ~ 45420462 (-) True G29182
TU36533 lncRNA upstream 647699 45461779 ~ 45462530 (-) True G29192
AMCG00008166 mRNA downstream 9740 44778736 ~ 44786186 (-) True AMCG00008166
AMCG00008163 mRNA downstream 17393 44776653 ~ 44778533 (-) True AMCG00008163
AMCG00008165 mRNA downstream 43468 44749090 ~ 44752458 (-) True AMCG00008165
AMCG00008164 mRNA downstream 55011 44721739 ~ 44740915 (-) True AMCG00008164
AMCG00008158 mRNA downstream 713078 44073663 ~ 44082848 (-) True AMCG00008158
AMCG00008173 mRNA upstream 38209 44852289 ~ 44872215 (-) True AMCG00008173
AMCG00008172 mRNA upstream 64930 44879010 ~ 44883212 (-) True AMCG00008172
AMCG00008175 mRNA upstream 137318 44951398 ~ 44963177 (-) True AMCG00008175
AMCG00008176 mRNA upstream 157260 44971340 ~ 44983745 (-) True AMCG00008176
AMCG00008180 mRNA upstream 183405 44997485 ~ 44997916 (-) True AMCG00008180
TU36269 other downstream 377730 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2031272 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 2946036 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 3594101 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 3778678 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 1236615 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 1666866 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 2899854 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 3309845 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 3467262 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile