RNA id: AMCG00008178


Basic Information

Item Value
RNA id AMCG00008178
length 1669
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00008178
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45012765 ~ 45019906 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAAAACGCTTGGGGAGATGGCGAATATTGTGCTGCTAGGCTTGCCGTAGATCCATGACGTCATCACAGTGCGCCGAAGCCGTACTGGGGGCGTAAAACACGGCGGCGGCATATTCCATTAACCTGGGCCGATTATCTGCAAATTGAGCTCGTggCTACGATGAGTTTGTTTGGGACGACTTCTGGTTTCGGAACCACAGGGTCCAGTGTGTTTGGCACCGCGACCACAGACAGTCACAATCCCATGAAGGATGTTGATGTAACCTCTCCTCCAGATGATAGTATTAGTTGCCTGGCCTTCAGCCCCCCTGCCATGCCTGGAAACTTCCTCATTGGAGGATCCTGGGCAAATGATGTGCGCTGCTGGGAAGTGCAAGATAATGGACAGACTGTCCCAAAGGCACAACAGATGCATACAGGCCCAGTGCTGGATGTTTGCTGGAGTGATGATGGCAGCAAAGTTTTTACTGCTTcctgtgacaaaactgcaaaaatgtGGGACCTTAACAGCAATCAAGCAATGCAGATCGCCCAGCATGATGCCCCTATCAGAACTGTTCACTGGATCAAAGCTCCAAACTACAGCTGTGTGATGACTGGTAGCTGGGATAAGACCTTGAAGTTCTGGGACACACGCTCTCCAAACCCAATGCTGTCCCTGCAGCTCCCAGAGAGATGTTACTGTGCTGATGTGGTCTACCCCATGGCTGTGGTGGCCACGGCTGAGCGAGGCCTGATTGTGTATCAGCTGGAGAACCAGCCGTCGGAGTTCCGCAGGATTGATTCCCCCCTGAAGCATCAGGTTAATGCCATCTCATTCCACCCTGTGCATGGGACCCTGGCCACCGTGGGGTCTGATGGCCGCTTCAGTTTCTGGGACAAAGATGCCCGGACCAAACTGAAGACCTCTGAACAGCTGGATCAACCGATCACAGCCTGCTGCTTCAACAGCAACGGCAACATCTTTGCCTACACCTCCAGCTATGACTGGTCAAAGGGGCACGAGTACTACAACCCCCAGAAAAAGAACTACATCTTCCTGCGCAACGCCGCCGAGGAGCTGAAACCCAGGAACAAGAAATGATTCTTCCAGCTGTGTCACATCTGTTTTGGAACACCAGAGGGCTGGGAGACTATAGAAGACCTGCCTTAATTTGTAAATAGCGAAGAACTCCTATTTGCTTGCACCTGGACCAGGGGTGGGGCACTGTGTATAAATGGACCAATCAGCAGAAGTCTTCTGCCCACTTTGATGCCAAAGGCAGGACTTCTGTGGTCAGGTGGTGACCAGGAGGGtgggacattttctttcagtaacgttttattttttttactttagatGAGCGTCTTACAGATTTTGAGTTTGCTGTCACTACACGATGTAGTCCAGTATTATTTGcattgtgtggaaaaaacaaaagcagctgttCTGCcatttctcttaaaaaaaaaaaaaaaaaaaaaaaagtttggggGTGCGGGACGTTTTTGTTCACTCTTGGATGGAGTGTGTGCTCGCAGACAACAAAGCTGACGGCAGTTCATGTGTCAGCTACACTCCTGTACAGTGCCCATGTCACAAATAATAAAGTACTATATAAAAGTCATTTATAAagtatgtaatttattttgtttgttttttgttttatcaatttAACACAGAAAAGCC

Function

GO: NA

KEGG:

id description
K14298 RAE1, GLE2; mRNA export factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36298 lncRNA upstream 196102 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA upstream 214302 44795924 ~ 44798463 (+) True G28995
TU36252 lncRNA upstream 262857 44691541 ~ 44749908 (+) True G28956
TU36226 lncRNA upstream 956157 44053965 ~ 44056608 (+) True G28931
TU36138 lncRNA upstream 1116814 43894185 ~ 43895951 (+) False G28862
TU36485 lncRNA downstream 333810 45353716 ~ 45354079 (+) True G29148
TU36491 lncRNA downstream 358105 45378011 ~ 45378353 (+) True G29153
TU36579 lncRNA downstream 519863 45539769 ~ 45542206 (+) True G29223
TU36682 lncRNA downstream 706077 45725983 ~ 45734261 (+) True G29271
TU36703 lncRNA downstream 868043 45887949 ~ 45888412 (+) True G29291
AMCG00008179 mRNA upstream 143 44998229 ~ 45012622 (+) True AMCG00008179
AMCG00008171 mRNA upstream 63559 44945752 ~ 44949206 (+) True AMCG00008171
AMCG00008170 mRNA upstream 238291 44773068 ~ 44774474 (+) True AMCG00008170
AMCG00008168 mRNA upstream 242653 44766145 ~ 44770112 (+) True AMCG00008168
AMCG00008169 mRNA upstream 251934 44753045 ~ 44760831 (+) True AMCG00008169
AMCG00008177 mRNA downstream 3242 45023148 ~ 45036027 (+) False AMCG00008177
AMCG00008181 mRNA downstream 87507 45107413 ~ 45121480 (+) True AMCG00008181
AMCG00008185 mRNA downstream 127491 45147397 ~ 45151336 (+) False AMCG00008185
AMCG00008188 mRNA downstream 208736 45228642 ~ 45232701 (+) True AMCG00008188
AMCG00008186 mRNA downstream 220032 45239938 ~ 45242352 (+) True AMCG00008186
TU35919 other upstream 1711343 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 1863722 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 1904523 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 3019388 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 4765527 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 3242 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 129523 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 320690 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 420607 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 1247985 46267891 ~ 46268327 (+) True G29353

Expression Profile