RNA id: AMCG00008179


Basic Information

Item Value
RNA id AMCG00008179
length 1764
RNA type mRNA
GC content 0.49
exon number 14
gene id AMCG00008179
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44998229 ~ 45012622 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACaggctctcctctcctcttctcttctcctGCAGCGCAGCAGCCAGTGCGGTGGCGGCTCTGGGCGCACACGGCTCGCTTCGAGGAGGTGCTATGGGCTGGGAGGGGCGGGAGGCAGCCACTGTTGCCGCTCGACAAAGCCCGAGCCTGGGGAGAGGGGTGGGTGTGTGCTCGGGTATGTCTGAACAGCTCGCTGAGGTGGACAGGCTTCGGGCCTCCCTGTTGTCCAAACCCAGAGTCAGTGACCCGCCGCTGCCCGACGGCGGAGAGATTACCGGCGAGGACGTTTTGTTCCGTATCGAGCACATGGTCCAGTCGGTGGTGGGCAGCCTGTCTGCTGGGGAGGCCCCGGCGCTGGTTATCCGGAACAGAGCCTTGTGGTCAAACATCAGGTTTGACGACAGCATTGGCCTTCAAACCGTCTCAGACAGCACTGTCACTACAGTCAGAAGTGACTGCTCCTCATCTGTGGCAAGATTCGCTTTAACCTTGAAGTTGCTGTCTGTGATTTATAAACTGGTACAGAGCAATACATATGCCACAAAGAGGGACATCTATTACAATGACACCCAGCTGTTCGGATCTCAGAGGACGGTGGATCTTATTGTGGATGACATTTCCTGTATGCTCAGGGTCCCTCGGCGGGGCCTTCATGTGCTTGCAACCTCTAAAGGTTTCATCACAGGTGATTTATGCTACACTGAGGAGGATGGCAGTAGGGTGAACTGTGAGTCCAGCTCTACGCCAATCCTGGTTTCATCCAATGTGTGTGGAATAAAGACTGACCTTAATGGATTAGACATCGTCTCGTCCGCAAAGTTTATCCTGATTGTCGAGAAAGATGCAACGTTCCAGAGGCTACTGGATGATGACTTCTGCACCAAACTGGCTCCGTGTATCATGATAACAGGCAAAGGAGTGCCAGATGTGAACAGCAGGCTTATGGTCCGGAAGCTGTGGGACTCTCTGCTCATCCCTGTGTTTGCGCTGGTGGATGCAGATCCTCACGGAATTGAAATCATGTGTATTTACAAGTATGGATCATTGTCCATGTCATTTGAAGCCCACAATCTGACTGTGCCTGCAGTGATGTGGCTGGGACTCCTGCCCTCTGATATTGAAAGACTGAATGTGCCCAAGGATGCTTTAATCCCATTCACAAAAACAGACCACAGCAAACTCAATAGCCTACAGAAGAGACCCTACATCACCAGCCAACCCCTGTGGGAAAAGGAGATGGAGCTGATGCTGAAATGGAAACTGAAAGCTGAAATCCAGTCCCTGACATCGATAGCCCCAGACTTCCTGACCCGCGTGTACCTTCCCAATAAACTGCACTACGGAGGCTGGATATGATGTCTTACTGCCCCCTTCTGGACGTGTCAGCATTGCATTAATTGTGAAGTGGAAGTTTAATTGTGTTAgttctgctttttgtgtgtgcatttttcatCAAACTGCTGTTACAGCTAATTGCATTGTGTGTTGCTGAGTCTGTTGCCAAGTCTGCATGAGCAAACaagattgcttttatttttgttccctGAAGGAATTCCGGCTAATATGTGTTATTATAAGGCaatcatttacatgttttctcGCAGTGTAATTTAAACTGCACCCAGTTTTCTGGTGGGGGATATGCGTGATTAACTGCAATTTTCTAGTCATTGTGTTCAAGGAATAAAAAggttcaaaataaatgtgtcaaaacACAGTGAGTAACGTCTTTGTGGAGAGTGATTCAAATGAATACAGTGG

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0005694 chromosome cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K10878 SPO11; meiotic recombination protein SPO11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36298 lncRNA upstream 181566 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA upstream 199766 44795924 ~ 44798463 (+) True G28995
TU36252 lncRNA upstream 248321 44691541 ~ 44749908 (+) True G28956
TU36226 lncRNA upstream 941621 44053965 ~ 44056608 (+) True G28931
TU36138 lncRNA upstream 1102278 43894185 ~ 43895951 (+) False G28862
TU36485 lncRNA downstream 341094 45353716 ~ 45354079 (+) True G29148
TU36491 lncRNA downstream 365389 45378011 ~ 45378353 (+) True G29153
TU36579 lncRNA downstream 527147 45539769 ~ 45542206 (+) True G29223
TU36682 lncRNA downstream 713361 45725983 ~ 45734261 (+) True G29271
TU36703 lncRNA downstream 875327 45887949 ~ 45888412 (+) True G29291
AMCG00008171 mRNA upstream 49023 44945752 ~ 44949206 (+) True AMCG00008171
AMCG00008170 mRNA upstream 223755 44773068 ~ 44774474 (+) True AMCG00008170
AMCG00008168 mRNA upstream 228117 44766145 ~ 44770112 (+) True AMCG00008168
AMCG00008169 mRNA upstream 237398 44753045 ~ 44760831 (+) True AMCG00008169
AMCG00008161 mRNA upstream 249658 44743630 ~ 44748571 (+) True AMCG00008161
AMCG00008178 mRNA downstream 143 45012765 ~ 45019906 (+) True AMCG00008178
AMCG00008177 mRNA downstream 10526 45023148 ~ 45036027 (+) False AMCG00008177
AMCG00008181 mRNA downstream 94791 45107413 ~ 45121480 (+) True AMCG00008181
AMCG00008185 mRNA downstream 134775 45147397 ~ 45151336 (+) False AMCG00008185
AMCG00008188 mRNA downstream 216020 45228642 ~ 45232701 (+) True AMCG00008188
TU35919 other upstream 1696807 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 1849186 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 1889987 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 3004852 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 4750991 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 10526 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 136807 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 327974 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 427891 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 1255269 46267891 ~ 46268327 (+) True G29353

Expression Profile