RNA id: AMCG00008183


Basic Information

Item Value
RNA id AMCG00008183
length 4306
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00008183
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45062781 ~ 45070971 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTGTGGTGGCTCATAAGTCAGTGCTCTTATTCTGGAATGGTTTTCTTTATCTCCAGAACCTGCTGGCCAAGGCTCTCTACGACAACCTGGCGGAGTGTTCCGATGAGCTGGCGTTCCGCAAGGGGGACATCCTGACGGTGATCGAGCAGAATGTGACTGGCAGCCACGGCTGGTGGAAATGCTCCTTGCACGGGCAGCAGGGGCTCGCGCCGGCCAATCGCCTTTACCTCCTCTCTGCCTCGCAGGCCGAAGTCCTGTCCAGGGGCTCCGAGGTGGGCTGCTTAACCCTGTGCGCTGAAAAGCCACCCCCAGTAGACTCTCCTCGCAGCCGCAGCCCCCAGAACATCTACCAAATCCCCTCCATCCCCCGCCAGTCCCCAGGCCCAGCCTACGAGATCATGGACAACTTATACAAAGTGCCCTCCGTCCCCACCCCCCGAGGCCCCACTCCCTCACCCCGAAAAAAAGCTCCTGAGAGAACATCGGACTCCCCCAGCAAGGTTGGTCCCAATCCAAACCCTCTTCTCAATGGACTATGCTTGTTTACTATTCTACTACGCAGTCAAGTGTGTCCCATTTCTGCAGGTGGGGCAGGTTGCAACTCCAGACTCCCCTTCAGCCCCAGCAAGGAGTTATATGATGTCCCCACCCTACAGCGCCGAGTCTCTCTCTTCACGGTCAgcccttgtgtgtctgtgtgcttctcaAAGAATACAGAGAAGGACAAGGACAGCACTCAGGAAAATGTCTATGCTGTCCCTCCCTCGATTTGCCAGGATCCTAGTTATGACATTCCCGTCCCATCTGCGACTGAGGCCCAGAAGAGACTGGCAGGGGGATACAGCACACTCCCCAACCCGCGGAAGTCAGACTGGATCTACGATGTCCCTGTTTCCCCGGAGAAGCAACCATGGGAGCAGGGATCCCCTGGCATGCTGCCCTCTCAGGGTGCAGGGGGCGGGGCAGTGAGGCAGCTTTTCTATGACACTCTGCCCGCGCGCATTGGGCCTCTGCAGAACCCCGAGCTGGCCCACTCCCTATACGACATCCCCAATCCCCACCCAGGCTGCAGGCCCAGCCCCGGGGATGGGATGCCCTTGAACTCAGAGCCTGCCCTGTCACAGAAGAAACTCAATCCCAGCTGCCCCAGAGACCCCCAGCGCGGCCACATGCCCATGCACCGTAGAGGAATAGCCGACGCCAAGTACGACCTGCCCCGGGGGGCCCCACTAAGAGAGGGGCTCGGGGCTGTGGCACATCCTCTGTACGATGTGCCCGCTCCCAGGGATGCTCTTGCGCCAGATGGGGAAGAGGAGGGCGAGGAGAAGGAGGCAGTATCGTGCCAGTTGGCGAAAGACAGTCAGCGCAGCAGTACGGCCTCCACTTGCTCCACGTCTTCCAGCTCCTCTGCCAGCTCCTGTGATTCCCTCACACTGAGCTCCCCATCACCGGAGCCCCTGCGGGAAGTGACTCTCACCCAGGAGGAGGCAAGCAAGCATCTGGCAGAGCTTCAGGAGGCAGTGTGCCAGACGGTGCCCCGTCTCATGGTGTTCGTGAGCAGCCGCTGGAGGAGCAAGGAGCACCTGGGCGTCCACCTGGCCGAGATCAGGATGGCGGCAGAGGAAATCGCCGACTCTATCACCCATTTCCTGAGCTTTGCCGCAGACGTGAGGGGCAACGCCAGGCGGCTGACCGATGCCAACCTCCAAGCGCGGCTCCAAAAGCAGCTGGCCATTGTCGCCGATTCTGGGCTCATCCTGCGGCAGGCCGTGGCGCAGCTGACCCAGGACGGTTGGCAGCTGGATGCCCTGGCCCAGGACCCCTGCCAGGCCCCGCCACCCGACCAGCTGGACCGCTTTGTGATGGTGGCCCGCACGGTGCCCGAGGATGTCCGGCGGCTCGTCTCTATCCTCAACGCCAATGGCAAACTGCTCTTCAGGGCTGCGCAGAAAGAGGCCGAGGTACCTGAAGGCAGGTGCCAGTCAGAGACTAAGATGAAGTGCGCGCTGGGAAATAAAGAGGCCGGGGATTCGGGGGGAGAAGACAGTGACTATGTGCAGCTGCAGAGGAAAGAAGAGTTTGAACAGCAGCAGAAGACTCTTCAGGAGAACAGGCGATTAAAGTTCGGTGTCCGAAGTGCCTCTGAGCAACAGGTGGACAAGAAGAGGAAGCCAGTATCCTGGGAGCACTGCCGGCTGTACTTTGGGGCTCTGCAGAGAGCCATTGGTGCATTCGTGAAAAGTGTGGTAGAGAACCAGCCGCCTGAGGTCTTTATCGGCCACAGTAAGCTGGTGATCATGGTGGGCCAGAGACTGGTGGACACCCTGTGTCGGGAGGCCCATAGTGGACAGGACAGCCAAGACCTGCTGTGCAAGAGCAGCCACCTGTGTGCCCTGCTCAAGCAGCTGGCTGTGGCTACCAAGAAGGCCGCGCTGCATTTCCCAGAGACCGCGGCCCTGCAGGAGGTGGAGGACTTTGCCAAGCAGCTGGCCCAGAGGGCACAACACTTTCGCACAACGCTGGACCTCTGAAATGCCTCCCGATCTCACAATGGCTTTTCGGCTACGGTGCAGGATCTAACatctctcttcctgtctccctctctctctattcacTGATTTTGTGAACATGACACACCAGACAATAACTTCCGTAAAGACAATATCCACATTCTCACCGTTAGTGTGATCCTTAACTTCATATGGTAGCAACtctgtataattattaatattataattcctattgtgttaaaacatgtaaaaggGTCTCTGCTACTTATGTTTCTTGCTTTAGTACAAAGATAAGTGAACATATTGCAACAGAGCCAAACTCTTCCATTGACAACCTGAGCTGAGgacacagaaaacaatatatgtataccGTAGataaggaaatatatatttttttgtacagcAGATTTAAAAAGGGGACTGATTTGATGAACTTTTCtaattgttttgtgtgctttttattttcaattctcCTCAatagtgtatattatataattagaGACTGGGAACACAGAACGAACTCTAATTCAACTCCTTTActttatgtgtttgtatgtatgtatctgaaACATCATtatattagtttaataaatatggaCATCCTTTGTaaaacttttaacattttagagattaataaaatattaaatgtgattttaacgTAAGACACAGAATTATCATAGTACGATCtaacatttaaagtgttttcagCAGATCCATAGTTTGGTGTTAGTAAATCTATAATTTCTGACTAAGAGAATGATAAAGTATCCAAACAGATtctattctttgtttttctgtggttgttttatttttttaattatgtattagttttttctttttttttcttttgttcttatttttttcagttttattttgtttccatgatttttctatactttttttaataagtttgtctattctgttttggttttaattttattttcttctgttctccaTCAAGAAACACAACTTTATCGTAAATTACTTCTACTCCACACATGTCAACGGACTTGAAACAAATCTTCACAAATATTACTGATAATTGAgtaatattgcttttatttcagctgtgaatacactcaaatacaaaaatacttgtAAAGGTGGACCagtcatatttttcatttttatgttttcaatgtaaTATTTGCTACAGTAAATTACCAAGGTTTATGTTTCTATATAaatctgttattatttatttagccccATCATCTTCCTGTTCACCATTCTCTTCAATCTTCATTCCATATGTGCTACTAAGTATTGTGGTGTtagtctttttcattttctaataaaaacttcgaaaatatgttgattagtagtagtagtagaggaAGAGGTAGAGATGTTGAAATaggtttctttaaaattaaatgaataatagaAAAAGTATACAAGAAAAAAGAGCAGAACCTAATTTGTACAAAGTCTGAATCCTGATATTAAATTCCTTCAGTTACCACAAGGAGGTGTTCCAACTTCAAATTTGGGTTACACTTTCATATAGAAAAGTACTGTATgccaaacaacacacacacacacacacacacagatcatttTGAAAAATTTAAGCTGCAATCACtaaaataagctttttatttggggatttttatatttattatatttctcagcagacacctTCATCCAGGGTGTCTTATAATTGTTGCAATATAGCTAAATTCTAAATGTAACTATACTCATGTACAATTACTTATAACACTTCATCATGAAGTGTGCAATGCATGCTTGTGtatcaacacttttttttatcagaatAGGACGGCTATAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36401 lncRNA downstream 26368 45034445 ~ 45036413 (-) True G29081
TU36275 lncRNA downstream 374606 44682437 ~ 44688175 (-) True G28976
TU36278 lncRNA downstream 381012 44681425 ~ 44681769 (-) True G28978
TU36277 lncRNA downstream 382739 44679816 ~ 44680042 (-) True G28977
TU36273 lncRNA downstream 396204 44666343 ~ 44666577 (-) True G28974
TU36439 lncRNA upstream 78530 45149501 ~ 45151327 (-) False AMCG00008192
TU36509 lncRNA upstream 282836 45353807 ~ 45354086 (-) True G29170
TU36523 lncRNA upstream 348619 45419590 ~ 45420462 (-) True G29182
TU36533 lncRNA upstream 390808 45461779 ~ 45462530 (-) True G29192
TU36551 lncRNA upstream 419036 45490007 ~ 45490890 (-) True G29206
AMCG00008180 mRNA downstream 64865 44997485 ~ 44997916 (-) True AMCG00008180
AMCG00008176 mRNA downstream 79036 44971340 ~ 44983745 (-) True AMCG00008176
AMCG00008175 mRNA downstream 99604 44951398 ~ 44963177 (-) True AMCG00008175
AMCG00008172 mRNA downstream 179569 44879010 ~ 44883212 (-) True AMCG00008172
AMCG00008173 mRNA downstream 190566 44852289 ~ 44872215 (-) True AMCG00008173
AMCG00008182 mRNA upstream 16226 45087197 ~ 45092120 (-) True AMCG00008182
AMCG00008184 mRNA upstream 21813 45092784 ~ 45095951 (-) True AMCG00008184
AMCG00008192 mRNA upstream 80061 45151032 ~ 45228504 (-) True AMCG00008192
AMCG00008191 mRNA upstream 162418 45233389 ~ 45234479 (-) True AMCG00008191
AMCG00008190 mRNA upstream 164088 45235059 ~ 45239415 (-) True AMCG00008190
TU36269 other downstream 644585 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2298127 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3212891 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 3860956 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4045533 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 979724 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 1409975 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 2642963 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 3052954 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 3210371 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile