RNA id: AMCG00008186


Basic Information

Item Value
RNA id AMCG00008186
length 1664
RNA type mRNA
GC content 0.48
exon number 2
gene id AMCG00008186
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45239938 ~ 45242352 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAGACCCGAACTTGATCGCCACCCAGAGCATTAGCAGGATATTTAGCCGCGCTGTGCCTCTCAGCTCTCCACCCTGCATGGAAATGGCCAGGCCCGGGTCATGGTGGCTGCAGCAGCAGTCCCAGCAGAGGAAACAACCTGAGCTGGCCATCCCCAGGAACCTCAGCTATGTGTCCAAGCATGGGTTCACAGTCCGGTTGGCAGATGCATTAGGGAAGGATCTAGGCAGCCAACAGAAACCTGTGAGGATCCGTCCGCCAGCACCCATTGAGCCTGTTTCTAGAGAGCCTGTGACAGTCTGGGGACCCTCTTGCGAGCCCAAGCCAAAGTCCATAATTCGGAGGAGAGCACGATCACTGCCTAGCTCTCCTGAGCGACGAAAGGGCTCCTATAAGGAAAGAGGGAGCCAGCGGGTTCGGTTTGTGGACTCTCTGGGGCTGGAGTTAGCCGAGGTGAAGGTCTTCAAGGCAGCGGAAGACCCCTCGGTGCCTCTGCATGTCCTTTCCAGGCTTTTGCTGAACTCAGAGCTGGCCACAGGCAGGCACCTCGAAATCCCCCTCCATTATCTGCAGCCAGACTTTGCCCAGCAGCCGGGAGACCAGGCAGATTTCCACGACAGGCTGTCCCGCCAGAATGTGTGCCTGGAGAGGGTCGTGTGCTTTGAGCTGGGCATCACAGGCTCTGTGTGGGTCCGTAACCTGGCCTTTGAAAAAGAGGTTAGTGTGCGCTACTCCTTCACAGACTGGAAGAGCAGCTCAGACACCAAGGCATGCTGGGAGTCTAGTGTTAGTGGAGGCTCGGTCACAACTGGGCCAGGTTTGGACCTGTTTCGGTTCCGGCTCCCAGTGCCTCCCTTCATCCTGCTGCCCGGTGCCACATTGGAGTTTGCAATCTGCTACCATGTCAGAGGGGCTGAGTTCTGGGACAACAATGATGGCCACAACTACAGTCTGACGTGCCACAGCTACAAACTCACCGTCCCCAAGGAGTGTGAAGGCAGCTTGGTACACTTCATCTAAGTGACAACTGAGGGGTCTAGCACCTCTGTCTCCCGACACAAATGGGGAAAACAACAGGCAAAAGCACCTTTTtgcaaactaaatacattttatttttattttttattaataagacatattttgaaatatgaacCTTTTTGCACTATGTCTCTCTCGGTAGCAGTCTGCTTTGAATACAATTGTCTCACATCTGACACTGGAACACAACAATACTAATTACTACTGTAAGTAAAATGTGGattgcactttaaataaaaacactgtaacCATTctgtcacattattattattttagtctaaggctgggattaaatcaaaactttgacccacccactaatcaaaaactacagaactgtactcagttgctttgcatttttcatcTAATCACAAATGTAACCTCTATgttgtacaggtttgtagtttgctattagcaggtgtgacaaagttttgatttaatccagccctaagtatgttttgcacattatTAACCAAAAAAGTAATTCCTTATATAAACTAAGATTTTACCTGATTTTGTCTGTACTGCTCCACAAGGTTATTAGAAACCAGTTATGGTAACAAATTGTTTGTTGTTGGAAGACCTTCttccaatatatattaaaaaaaggaaagataatACAAAAG

Function

GO: NA

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36298 lncRNA upstream 423275 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA upstream 441475 44795924 ~ 44798463 (+) True G28995
TU36252 lncRNA upstream 490030 44691541 ~ 44749908 (+) True G28956
TU36226 lncRNA upstream 1183330 44053965 ~ 44056608 (+) True G28931
TU36138 lncRNA upstream 1343987 43894185 ~ 43895951 (+) False G28862
TU36485 lncRNA downstream 111364 45353716 ~ 45354079 (+) True G29148
TU36491 lncRNA downstream 135659 45378011 ~ 45378353 (+) True G29153
TU36579 lncRNA downstream 297417 45539769 ~ 45542206 (+) True G29223
TU36682 lncRNA downstream 483631 45725983 ~ 45734261 (+) True G29271
TU36703 lncRNA downstream 645597 45887949 ~ 45888412 (+) True G29291
AMCG00008188 mRNA upstream 7237 45228642 ~ 45232701 (+) True AMCG00008188
AMCG00008185 mRNA upstream 88602 45147397 ~ 45151336 (+) False AMCG00008185
AMCG00008181 mRNA upstream 118458 45107413 ~ 45121480 (+) True AMCG00008181
AMCG00008177 mRNA upstream 203911 45023148 ~ 45036027 (+) False AMCG00008177
AMCG00008178 mRNA upstream 220032 45012765 ~ 45019906 (+) True AMCG00008178
AMCG00008187 mRNA downstream 3601 45245953 ~ 45269832 (+) True AMCG00008187
AMCG00008193 mRNA downstream 85811 45328163 ~ 45336254 (+) True AMCG00008193
AMCG00008194 mRNA downstream 98222 45340574 ~ 45343865 (+) True AMCG00008194
AMCG00008199 mRNA downstream 133613 45375965 ~ 45399868 (+) True AMCG00008199
AMCG00008200 mRNA downstream 158517 45400869 ~ 45408463 (+) True AMCG00008200
TU36420 other upstream 68110 45149429 ~ 45171828 (+) True AMCG00008185
TU36366 other upstream 203522 45023148 ~ 45036416 (+) True AMCG00008177
TU35919 other upstream 1938516 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 2090895 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 2131696 43105713 ~ 43108242 (+) True G28636
TU36476 other downstream 98244 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 198161 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 1025539 46267891 ~ 46268327 (+) True G29353
TU36848 other downstream 2337861 47580213 ~ 47586235 (+) True G29418
TU36851 other downstream 2352752 47595104 ~ 47595686 (+) True G29421

Expression Profile