RNA id: AMCG00008187


Basic Information

Item Value
RNA id AMCG00008187
length 4563
RNA type mRNA
GC content 0.50
exon number 39
gene id AMCG00008187
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45245953 ~ 45269832 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGGAACACGCGGCTCGCTCCGGACTCGGGGTTTTCATTGACGGCTATTGACGTCTGGATCGGTACAATACACCGCAACGCCAGCATCTCATTCACGGAGCTGTGTGATCCCTCAAATCAGAAGGAAGCGGGCCGCTTGAAACTCCAAGGAGCTcccTGTCCTTTTTACTCAGGGTGGAAGgtttttgtttggaCTTCTAATACAAACAAACTGATTTTGGCTGGTGAAAATGCCACCCCGCCAGGATCAACAGCTTGAGAAGTGCATTGACGAAGCCCTGAAGAAAAATGAGTTCCAGGGTTTGGAGGAGTTGCTGGCGGATGAAAGCATCGAAGGCACAACTCAGAAATGTTCCAAACAGTTGTTAAATAAACTGGACAAACTCCTAAACAGGGAGCTTGATAAAAAGTGTGTGAAAAATGCCTCTCAGTTGCTGTCTTGCCTCTATAAGTTTGGAAAGTCCCTGAGCATCCAGGGAAAGACTGCTTTTCCCATGTTATTGATTCACATGGTGCAGTGGTATGAGAAAGCCAGGGAGATGTGGGTAGAAGCCGGGCAACTGAAAAACGAAGCACTGATGAATCTCGCAGAAGATTTTTTTGACTCTTTGATGGTTGTTCATGAAAACAGCAATGAGgGAAAAAGACAAGTGGGAGAAGCCTTCCTTCATCACACTGGGCAGTTAACTGGAGATACCAGAGTGCATATAACCATCCAACAAGAGGCGGCAAGAAAACTGAACCAGATTCTGGATGAAATCCCACAAGAgctcaaaaaacaaatgttgatgTCTGAAGAGGACTTAGGTGTCATGAATATTTTAGCCAAAAGAATAATGGATGGTGGAGATTATGACCTGCAGATAGCGGTGACCGAGGCCCTGTGCAGGATGACTACAGAGAAACACAGGCACCAGCTGGCAGACCAGTGGTTTACCATGGAGTTTGTAGCCAGTGCCTTCAAAGGGATTAAGGATTCTAAATTTGAAACGGACTGCAGAAAGTTTCTCAACCTAGTAAATGGCATGCAAGGAGACAAGAGAAGAGTGTACTCTTACCCTTGCCTGGAAGTGTTTCTGGACAAACATGAGTTGCTAATGCCAGCCGACGATAAACTGGAAGAGTTCTGGATAGATTTCAACCTGGGCAGCCAAAgcatttctttttatgtttCCCCCACTGATGAAGAGGAGGAGAATCAGTGGGACACTGTTTGCATTCCCGAGAATGAAGTCCTGAACTACACAGTTGAAGaaaagaatgggaaaaaaatattaaaggtgTACTTTAAGCAGACATTAAATGTCAGCGACAGACAAGGGTCCCAGATCCATATCCATTTCAGTGCATCACTGGACATCCATGGAGCTGTCAGACATGTGTATggagatgaaaaaaacaaaGAATTTGCTGGAAAGTGTCGAAGCTCAGTTGTGAAAACCACTGTCCAGATTATCTTTGATGAAGGTGGCTCTCAgGTCCTAGTTCCTGAGAGTCAGGTCTCAGTCGCTCTCAGTTTGGATGAAAAGCCCAGAGGGAAGGCCAAGAAAAGCAGTCAGCTGCCCACACTTTCAAGTGTGCCTGCAGAGATACTTCAGGCAGCCAGAGTCACTCAAGCAGCACCACACCCCGTCCAGGCCAGTACCCCCGTCAGAAGGAAGGTCTCTGAGGCCAGCTCCATTGTGTCCAGCAGTGGGGGGAGGTGGACAACGGCGAGCCCTGTGTCAAAGGCAATGGTGTCTGCAACTCCAGCACTGAAGGGCAAAGTTAAACCAACCCTAGAGCTGGTCGGCTCctcaaaaaaaaacagaagctatACCATCAGCGAACTGATGGCCACAACATACAGTACATCTGTAGTGAGTGTGCAGTCTGGCAGAGAAGCAGGTGTCCTGGGACGAGACAAGGcaaATGATCCGAAAAATATTGTACCTGACTCCCAGCCTGTTATGAGAAAAGACAGACGCTTATTGCCTGGCCTTCTAAGCAGTGTTTCAAGGGTGAAAAGTGCTGTGTCCCGAAAGCGGTACGCTGTGTCTGAGGGGGTATCTACAGTTCTAAACCGCCAAGAACGAACGTCTTCCACGGTGGATGTCCTTAATCAAGGTCAGTCCGAGCAGCCAGTCTTGTCTTCAGCGCAACGCAGTCGGGCAAATGACAAAGTGCTACAAGAGCAGGTCACTGAGAAATTGGAAAAGTTCCTTAAAGAGAAAATCCAGAGAGCAAGATCTCCTGAAGGAACCGGGGCTCTGGGACAGGAGGAAAAGCCTGCACAGCGAGGGACCAGGCGGAGAGGGAAGACAGCTCAGCCACAGGAGGCGAAAGAGCACCTCAGTACAGAAATACCCAACAGACCTGCCCCAGCAAGCCCAGCCAAGCCCCTGAACAGAACACTACCTGTGTCAGACAACAGCCCATACACCTTTGGCAAGGACTATTCTTTCTGCAGGGAAGTGTGTCCACAGAAAGTACAGGGGCGTCCCATGGCAGCTCCCAACAGTGAGGCCCAACAGAGGACTTTGCCCGTAGCAAAAGGGCCTGTCGAAAAAATGATGAGAACGATTTCCAGGAAGTACACAGCTCAGAGAGGGCCCAGTTTAGACACATGTGCCCAGAACAGGGATGACATTTACAGCTTCAGAGATGAGTCAGCAGTGAGTTTCGAGCCCGGACGCCGTGCTGTGAAGAAGCACCTATTCAGTGACACTGAACCTGATTCCAGGCCAGAGGACAGCTGCACAAACATCAGCTGGCTCAGGGACTCCAGCAGGAGACCCAAGCCAAAAGTGGCAGACTACAGCAGGCGGCGTGCTGGCAAACCGACCCCGAACCCCGACAGCCATGTGTCACCTGATTTGTCCTCACCTCTTCCAAAACCATCGAAGAAGAAAGCCAGTTCCACAAAGaagagggaaagaaagcaGACTTCACCGAAGGAACAGAGAGCCACGACGTCTGGGCGACCAAAGAGAACAGCAGCACAGAAGCAGACTTACAAAGACCCCTCCGGATCAGACAGCTCGGAAAATTCACTGGACGAGGAGCTGCCCCTTAGAAAGCCCAAACAGGTGCAACCCAACAGTAAAGAAGAGGAGACTGTGGGGGCTCCTCCCCCAGTTGAAAAGAGGAGTAGAGGACAGAAAAACCCTGCTGCGGACACATGGGCCTCTGATTTCTCCCCTCCGGCCTCTCCGCCTCCAACAGTGGAGAAGATGAGATGCGCGGAGATGAAGTCAGTAGTGTCGCCGCGGTCCCCCGTGTCTGCCCTATGCAATCTCTCGGTGTCCTTCACTGACTCTCCCTCTCCGCCACCGCAGCTCCTGGAGCCCCTCCAGGGAATCCTGTCCCAATCGTTCTATAAGGCAGACCAGAAGAGTCTGAAGGCCCCTTTCCTCCTGTCACTCAGTCCAGTGACTAAGCTTTCCAACCTAGCTATACATGAGCATGACAAGGCCTCTCCAGCATTGACCCTGATCTCAGAGCCCCCTTTGACCTCAACTGCAATTGAGATGTGTGTAGGCGAGGGGACGGAAAATGGGCAGATGGCAGAGGAGGAGGCCGAAGCggtggaggagagggaggacagCCAAGACGTGCTGGTGTCCTTTGACAAAGAGTCAGTCCTCTCTGTGGGAACACAAAACAGGTCATCGGGGAAATCTCTCAGTGGCAAGaaaaCACCAAGATATGGTACAACTGCAACACAGAAAGTCCACATGTCAGGCTTTTCAGGCACCCCCTCTGATACCCTGAAGCGGCTCCATGCCAACCAGGGGACAAGCAGCTCTGAAGACGAGGACGAAGAGGAAAGCAATTGGAAAGAGCAGGAGCCTAGAATGACGCCCAGAAAACTCTTCAAACCAAGCCGGCCAGACTGGCGGGCTGAGATGGCCCCCATGGCTGCCACTGTGAAGCAGCCTCCACACAGAGAGGAGAAGGCCAGCAGCTgtgaggaggcagaggaggaggaatggGGAGAACGAGTCGAAGTCCCAAGCAGGTCCAAAAACCTCTTCCGAAAGCCAGGACTTGATGGGACAGGAGATAACGACATCGAGGTGCACTCCAGCATCTCCTCCCACGTGGTGTCCACACTGGACCTCAACTCCTGGGAATCCAGCACAGAGCAGGACATGACAATGATGTGTCAGAAGTTCAGTACAGAGCTGAAGAGGAAATTCCAGAATCGCTCCAGGAAGATGGATTCTTACACCAAGCAGTCACTGAAGTCTATCCAGCAGCATGTGTCCTCAGTCCGAGGGCAGGTCCAGCAGTACAGGTTCAACAGACTGGAGAGTTTCAGGGGCACAATCATAGAGGAGCTCAATGACTTCGAAAAGGATGttttagctttaaaaaatatggaGAAAGAACTAACCGATTTTTGGAAAAAACAGTCCCAGACATTGAGTACGTATCAGAAGAAAGAGCAAAGGAGAATTGAGAACCTCAAGAGCTCGTTTGAACAGAATGCATGTCACAGCCTAGAGTACGAAGAGAGACTCGTCACCACAGAGGTGAGTGGTGGACAAGGACTTCAGAAGGGAGCCACCATAAGATGA

Function

GO: NA

KEGG:

id description
K19529 SYCP2; synaptonemal complex protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36298 lncRNA upstream 429290 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA upstream 447490 44795924 ~ 44798463 (+) True G28995
TU36252 lncRNA upstream 496045 44691541 ~ 44749908 (+) True G28956
TU36226 lncRNA upstream 1189345 44053965 ~ 44056608 (+) True G28931
TU36138 lncRNA upstream 1350002 43894185 ~ 43895951 (+) False G28862
TU36485 lncRNA downstream 83884 45353716 ~ 45354079 (+) True G29148
TU36491 lncRNA downstream 108179 45378011 ~ 45378353 (+) True G29153
TU36579 lncRNA downstream 269937 45539769 ~ 45542206 (+) True G29223
TU36682 lncRNA downstream 456151 45725983 ~ 45734261 (+) True G29271
TU36703 lncRNA downstream 618117 45887949 ~ 45888412 (+) True G29291
AMCG00008186 mRNA upstream 3601 45239938 ~ 45242352 (+) True AMCG00008186
AMCG00008188 mRNA upstream 13252 45228642 ~ 45232701 (+) True AMCG00008188
AMCG00008185 mRNA upstream 94617 45147397 ~ 45151336 (+) False AMCG00008185
AMCG00008181 mRNA upstream 124473 45107413 ~ 45121480 (+) True AMCG00008181
AMCG00008177 mRNA upstream 209926 45023148 ~ 45036027 (+) False AMCG00008177
AMCG00008193 mRNA downstream 58331 45328163 ~ 45336254 (+) True AMCG00008193
AMCG00008194 mRNA downstream 70742 45340574 ~ 45343865 (+) True AMCG00008194
AMCG00008199 mRNA downstream 106133 45375965 ~ 45399868 (+) True AMCG00008199
AMCG00008200 mRNA downstream 131037 45400869 ~ 45408463 (+) True AMCG00008200
AMCG00008204 mRNA downstream 146445 45416277 ~ 45423427 (+) True AMCG00008204
TU36420 other upstream 74125 45149429 ~ 45171828 (+) True AMCG00008185
TU36366 other upstream 209537 45023148 ~ 45036416 (+) True AMCG00008177
TU35919 other upstream 1944531 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 2096910 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 2137711 43105713 ~ 43108242 (+) True G28636
TU36476 other downstream 70764 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 170681 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 998059 46267891 ~ 46268327 (+) True G29353
TU36848 other downstream 2310381 47580213 ~ 47586235 (+) True G29418
TU36851 other downstream 2325272 47595104 ~ 47595686 (+) True G29421

Expression Profile