RNA id: AMCG00008189


Basic Information

Item Value
RNA id AMCG00008189
length 1935
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00008189
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45272415 ~ 45280354 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGTGCTACCTCGTTTGtccaatatatacatacatagccTATACCCCCCcatcatatatgtatatattcgttaatttactttttacaacCTTGTCATTTTACAAAGGAGTggaaacaagtgaaaataagGAAGGGGTTGGGGTTAGGCACTGAACATACACACCGAACCCCTTGGGCGCAAACggcaggagagaggggaggaaaaCAGAGGAGGGCAGTGCCGATCACCCGATCTGACGGATAGATGTTGCGGCGGCACATGCACTTGCACAGTATAGCAACAGTGGCCGTGTGTTACAGCAGAGCGCAGCGCCACTTTCGTGTTCAGCCTCCAAATCCTCCTCCAATAGACTGCGGCTGCTTGTGGGTAGAAGAGGAGAATAGGGCAGGTAGAGAGTCGGAGGGAGCCCGGAGCGGCGGAAACCGAGGGAGGGGAAAAAGCCTTTTGAGTGGATGAGAGGGGCTTGCCAGAGAGGATGAGCCGGGGGAAGCCTCAGCGGTCTGTACTGCAGCAGTGTGTGCAGCCGCGGTCTGAGTGTGCGTGGGAATTTCTCACGCAACGCCTCTAGAATAAAATTACGCACGGCAAGCGGGCAGGCGGGGAGTACCGCTCTGGATAGGTTGCGAGGCAGACTGCAGGATCCACAGCCTCTGCAACAGCGAGGGACTCACAGCCACAACATAGCCGTGTCTCGGGTCGGAGTAGCGCTTTCCTTAGATCTGATCATACTGATGCATATTGATGCGCCGTGGATAAGCAAGGACGCATTTGGGATTGGTTCCACAGCAGACCAGAGGAGACCCGACACCCAGCCAGTGCACCTGGATCCCTTTCCCCGATGTGGAGGTGGTCTCCATCCAGGCAAAGCAGTCGGGCTCTAGAGTCGAGATGGAAACATCGGGCTCTTCTTTGTAGAAGCTGCGATTCGGGGGACTCTCCCTTGCTCTCAGGGATTTGGGGTGCTAAGCGAAGAGTGTGAAGGACATTGATTCAGGGACCAGCTCCGAAATGGTTCAAAACGTGATCTTGGTGTTTTTCCGCAGGAGGCTAAGCCAGCGGCCGGCAGTGGAAGAGCTGGAAAGCCGAAATATCCTCAAACAGAGAAACGATCAGACAGAACAGGAGGAGAGAAGGGAAATTAAACAGCGTCTGAACAGAAAGCTGAACCAGCGGCCCACAGTTGACGAACTGCGGGACCGGAAAATCCTCATCCGCTTTAGTGACTACGTTGAGGTGGCCAAAGCTCAGGATTACGACAGGCGGGCAGACAAGCCCTGGACGAGGCTCTCGGCGGCTGATAAGGCGGCAATACGGAAAGAGCTGAACGAGTACAAAAGCAATGAGATGGAAGTCCACGCCTCGAGCAAGCACTTGACAAGGTTCCACAGACCATAGCAAGGTTTCTTCTATGAAGAATTGCTGAACCCGGTTCTGTCAATGAAGACCTTGAGAGGATTCTTCAAAAACCCTTGCCCAGTACCTAGGTGTCCTGATATTTGGGCGCTCTGAGCCTTGGAGGCCATGTCTCTACAGTGGGCACTGCCGGTGGGCATGGTGTGGCGATGCCCGCACAGGGAACTCTTAACTCCGGCCAGACATCTCTCGTGTTGTTGAAGGGGGAGGAGAGAAGCGGAGATCCCTTTTTTTTGCTGTTCAATTCcaagacttgtttttttaagactCTTTCTAAAAGGAAGCCTATCGATACCAGGTGGGAGTTGTGCATGTGACCAGTTTAACCTTTCCTACACCATAATGCCACAACTCGTGGATCGTGGGCTGTCATCGATCTAGAGCGAAATTTCATATCAACTGTATAAAACGTCAACCTTAACAGGAATCCATGTCttatcacaaaaaaaaattTCCCTTTGTAAGCACTATTTATTGTCTGCACAATACaagtttcaatttttttaaaaagaacatgctgc

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K17594 PHACTR; phosphatase and actin regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36439 lncRNA downstream 121088 45149501 ~ 45151327 (-) False AMCG00008192
TU36401 lncRNA downstream 236002 45034445 ~ 45036413 (-) True G29081
TU36275 lncRNA downstream 584240 44682437 ~ 44688175 (-) True G28976
TU36278 lncRNA downstream 590646 44681425 ~ 44681769 (-) True G28978
TU36277 lncRNA downstream 592373 44679816 ~ 44680042 (-) True G28977
TU36509 lncRNA upstream 73453 45353807 ~ 45354086 (-) True G29170
TU36523 lncRNA upstream 139236 45419590 ~ 45420462 (-) True G29182
TU36533 lncRNA upstream 181425 45461779 ~ 45462530 (-) True G29192
TU36551 lncRNA upstream 209653 45490007 ~ 45490890 (-) True G29206
TU36650 lncRNA upstream 319205 45599559 ~ 45714037 (-) True G29249
AMCG00008190 mRNA downstream 33000 45235059 ~ 45239415 (-) True AMCG00008190
AMCG00008191 mRNA downstream 37936 45233389 ~ 45234479 (-) True AMCG00008191
AMCG00008192 mRNA downstream 43911 45151032 ~ 45228504 (-) True AMCG00008192
AMCG00008184 mRNA downstream 176464 45092784 ~ 45095951 (-) True AMCG00008184
AMCG00008182 mRNA downstream 180295 45087197 ~ 45092120 (-) True AMCG00008182
AMCG00008196 mRNA upstream 14946 45295300 ~ 45302966 (-) True AMCG00008196
AMCG00008197 mRNA upstream 57100 45337454 ~ 45339881 (-) True AMCG00008197
AMCG00008195 mRNA upstream 63825 45344179 ~ 45350087 (-) True AMCG00008195
AMCG00008202 mRNA upstream 128909 45409263 ~ 45414813 (-) True AMCG00008202
AMCG00008201 mRNA upstream 141411 45421765 ~ 45435361 (-) True AMCG00008201
TU36269 other downstream 854219 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2507761 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3422525 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4070590 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4255167 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 770341 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 1200592 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 2433580 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2843571 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 3000988 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile