RNA id: AMCG00008190


Basic Information

Item Value
RNA id AMCG00008190
length 3608
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00008190
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45235059 ~ 45239415 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAACCTCCAGCGACAGCAGACAAATGGATGAATACTAGCACAGCAGATCATTGCCTTGTCTGATTGATTGAGTAAAACACGGAGACTGTTAACTGCAAATAcggttttatttgtatttctacgTATGCTTTGTGAATTTATGTTTCAATAATGACAATGTATGGCAAGCAAAGCATGATCTGTTGTTTTGATGAGGGGATTACATGCGGACATTATTGACTCCCTTAAAATTTGAATGTATATCTGCTGAGATTGTGATTGTGGTAAGACCTAATCCTGGTGTGAAATAAAACCTATTCAACCTATATTTTATCTGCAGAATAGATTGAGCACTGCAGTGTATCTACCCAGTTCACTAAGTGCGCATTTCGCTTTTAGCAAAAATGGGTCATTTCTTCCACCGTATTACAATTGTGTTGTATCTGATGAGGACTATAGACTTGAATCTTTAGCAAACCTAACCCCCTGGCTCGCCGGGTAGTGAAGTTGAGCTTGTGGGGTGCAGATAGTTAGCTACCGTTTCTGTGATTTGACTATGGGACCCATCCTGCAAGAGCGACCAGCGACAGCTGCCCTCAAGAAGGGATCTTCCAAAGAGCGAATAAGGGCTAAATGCTCCGGGAACAGCGGATCAGTGAGCAGttcCAAGAAAGGGAAGGCAAGCCAGAACCACAGAGCCCAGAAGAAGGCAGGTGTGCAGCCCAAGCATGCATCTCCTCGCCAGGGCAAGGACCCAGCTCAGCCAACAGAGCGGGGTTCTCAACGCAGAGGGAACAGAACCAAGCCTGGGAATTTGTCCATCACTGAGGGCGCCCCTCTGCCTGCTTCAGACAAACCTCAGGGTCCTGGCGAAGTAGACATGAAGGCTTCACTTTGCCTCTCTGCAGGCCGAGGTAGGAGGATTGAGACCCTGCCACAGCCCCAGAGTGAGGGGGACAAAGACGGAGGCTCCTCTGGTCCAGGCAAAAACAGACGCATGCTGTCCCTACCCCTGGTGCCCCCTCACTCAGATGCATACTCCGAGCCGAAGGAGGGGCAGGTCCCCAGCCTAGAGACACTCAGGCTGTATGAGGGAGTGGAAGATGATGCCGACAGTGCCAGTGACTTATCTGACTCAGAGAGGCTCCCAGTGCTCCCCTCACCCTGCACCCCGCCTCAGCTCAACCTCCGGGCCGAGGTCATCAACCCCAGCGACTTCCACCCCTACTTCCCCGGCCCTCGGGGAGGGAGCCATGCCAACTACAGCTACCCAGACTTTCTTCCTCCCCCCTTCAATACCTGGAGTCTGCGTCAGCTGGCCCTGTTCCTCAACACGGAGGGCAGGGGGGCCCCTCGGCCGAAGCCTGTGGGGCAGCTGGAGAGGTACCTGGAGCGCCTCCTGCAACTTGAGTGGCTCCAGATCCAAACCACTCAGGCGGAGAATGGCAAGCCTTCAGCCCCTGTGTCTGCCAGCCGCCAAAGGCCTCACACTGCTCCCCCTGGGCACCTCAGCCTTCCCAAGAGCCTCCGTCAGTGCCAGCGTGCCTTTCCCCTGGCCTTCCTTTCCTGCTTAGGGAACCCCTCTGCCTCCCAGCTCTCCCGGCCCGCCTGCCCTCACTGCCGCATCCACTACCCTTTCTGTAATGGCACCTGCCGCTCCTATGCTTACCAGCGCCACTCCCGGCTTAGCCCCTTGCTGGAGCGCAGAGTGGGGTCCGCTGTTCCTCAGAAGAGGAGCAGCAGTGAGTCCCGGGTGGCCTCTTCTGATGCTGGGGCTCGGGTTCAGAAACCAGGGAGCCCCTCGCCCAGCGGGAACAGCCACCTGAAACGCATGCAGGCTGTGGGGAACATCCGCAATCCCCTGCCAAGCCCAGGTCCCAGTATCAAGCCCCAGACTGCACAGAGAAACAACTGTGCAGGGCCTGGGGTCCGAATTGGCAGGCAGAGGGGTTCCATGGTGGTCAAGGGTGTGGATTCAGAGAAAAAAGGGTCTTCTTGTGGGACCAGTGGCAGTGTGTGGGATGTCAGCCCAATAAGGAGGAGTGGGAATGAGAGGCAGAGGGCAGCAGTGACGGCAGTGGCGAGCTGGGATTCGAAACAAAGCTGTATCTTACCATCCAAAGAGCCGCCCCCTGTCTCCAAGGGTCCAGCTAAATCTAATGGGAAAGTGAAACATGTTCAGTTTATTACTAAATAACTGCATCCACCTGCATCTAGACACGTCTTTTCCCTAATCAGAATGCAGTATGAATGCTTTAGGGTTTTACAAATCTCTCTATATTGCAATATCTTGCCAATAAACTTtgtgtaaatatacatgtaaatatacatttgtcagAATCATATTGTGGCACTGTGAAGCATCATGGGCGTGAAGgagctacattttaaatgtgtaagaaTAAGTATTCAGGACCATCATAATCATttttgagagagaaagggaCTGAATAACAATAACTGGAATCAATAGCTGAATAATGCTGCCTTGAATTATTTTGGGTTTACAAGAAATTTTGCAGAATCTGTCTGCTGATTAGAAGAGAATACAGGATCAGATATTTTGCATATTAGTCTGcagtaaatgttatatatatttgttaagcTGCATAATTTGTCAGCGTTTATATTCCTCTGATATCCTTTTGTATTTAGATTGCTTGTTTAGGAACTTAtcatttaatgtttcatttatccatttgtttttctagcaTAAGCCAAGATACatagtattttattcaataaaatctGTTTCTCTAGGCCAGTATATCTCTTACATCCTCATAGGATAAAATGAAATCATTTTCTTGTCAATGCAATCTTTTTGTCagtaaaaaatgcatatataatatatgtttgtatttcttatacagaaaagattaatatattttttagtgttCTCCACCATATATTTATACTTGCATATTGTAGATAGGATGCAAAGACATTTAAGCTGACCTGGTTGTATTGTGCATTTATGAATTTTCATATAATTGTCTATGATATGTGGTAAACGTTTTTAACTGGAAgatttaagcaaaaaaaaaatatatatatatattattatcttTAATGTGTTACATATTTAAGTCATGTTGATATAATGGAAAGCTGCACTACTTgtcaagtttctaactttcaaATTTTGGTTAGGAAGGTTAAAACCATCAATTGTTAAATgaacatatacatgcatatatacattttagtgtACTATGAAGTgtttctttgggggggggggtggtcagAAAAAATGTTAACTATAACGTTCAATGCAATATTGGATAATATGTCTTGAACATGTTTGtcctttgtatgtattttggttGGATTTCTGTGctatatttgtttccttttatggTCTTTGTCGTGTCTGTATTTATTGAAGactgcattatttttcactatttttgttttttactattTTGAAAAATCCAAAAGAAGTTAGCAtggtatatttatttcatacaatTGCAATGTCCAATGCCAGTTAATGCCAGTGACACTTAAGAATTTATATCAAATTAATCAGTGCTTATATTAGAAATGAAATGATGGATATCACTAGTTTCATGATTCAGGTATGAACAGAATTAACAAATCCATATGTTACCTCAAAAGTCTGCag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36439 lncRNA downstream 83732 45149501 ~ 45151327 (-) False AMCG00008192
TU36401 lncRNA downstream 198646 45034445 ~ 45036413 (-) True G29081
TU36275 lncRNA downstream 546884 44682437 ~ 44688175 (-) True G28976
TU36278 lncRNA downstream 553290 44681425 ~ 44681769 (-) True G28978
TU36277 lncRNA downstream 555017 44679816 ~ 44680042 (-) True G28977
TU36509 lncRNA upstream 114392 45353807 ~ 45354086 (-) True G29170
TU36523 lncRNA upstream 180175 45419590 ~ 45420462 (-) True G29182
TU36533 lncRNA upstream 222364 45461779 ~ 45462530 (-) True G29192
TU36551 lncRNA upstream 250592 45490007 ~ 45490890 (-) True G29206
TU36650 lncRNA upstream 360144 45599559 ~ 45714037 (-) True G29249
AMCG00008191 mRNA downstream 580 45233389 ~ 45234479 (-) True AMCG00008191
AMCG00008192 mRNA downstream 6555 45151032 ~ 45228504 (-) True AMCG00008192
AMCG00008184 mRNA downstream 139108 45092784 ~ 45095951 (-) True AMCG00008184
AMCG00008182 mRNA downstream 142939 45087197 ~ 45092120 (-) True AMCG00008182
AMCG00008183 mRNA downstream 164088 45062781 ~ 45070971 (-) True AMCG00008183
AMCG00008189 mRNA upstream 33000 45272415 ~ 45280354 (-) True AMCG00008189
AMCG00008196 mRNA upstream 55885 45295300 ~ 45302966 (-) True AMCG00008196
AMCG00008197 mRNA upstream 98039 45337454 ~ 45339881 (-) True AMCG00008197
AMCG00008195 mRNA upstream 104764 45344179 ~ 45350087 (-) True AMCG00008195
AMCG00008202 mRNA upstream 169848 45409263 ~ 45414813 (-) True AMCG00008202
TU36269 other downstream 816863 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2470405 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3385169 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4033234 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4217811 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 811280 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 1241531 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 2474519 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2884510 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 3041927 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile