RNA id: AMCG00008192


Basic Information

Item Value
RNA id AMCG00008192
length 963
RNA type mRNA
GC content 0.62
exon number 9
gene id AMCG00008192
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45149501 ~ 45228504 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCTGCCTGCGATTCCGTATGACGACATCGGCGGCAGTTCGAAAACAAGCCTCCTGGTCTTGGTTGCCTGGCGCTCATGGACACGAGGGCACGGCAGGAGCAGAGGCCGAGCGCATCCTTGTTAATCTCCTGCTGCTGTGCGTCCTGCTGTCTGTCCCCTGGGAGTGGGTCCGGCTCTACCAGATCGAGATGGCCAAGAAGATGGCAGTGCTTTCAGAGGTGCAGTGCCGTAAACACGTAGAGCAGCATTGCCTGGGACGGACGGCTTTTAGCACGCAAGTGATGAGTCGGCTGAACCGCGGTTGGCCTCAGTACTGCAGCACCCAGGATCTGTCCTACTGGGACTCCCTGAAGGCCTGGTTCAGCAGCCACTTCACATGGAGAGGAGAGGCCTGTGAGAGGTACCAGCGCGCCCTCATGGTAGAGCCCTTCTGGGAGGTCACCCCATTGATGGCCCTGGCGTCAGCAGTAAGTCGAGTAGTGGTCCAGCCCATGGAGCTGGGAGCCCAGGCAGTGGGGCGCAGTCTTCGCCTGTTCATGCTTGAGGCTGCTGGTGAACCAGTAAAGGTGAAGActgaaggaggaggagtggaGTCGCCCAGGCCAGTGAAGTCTGTGTCTGGCGGGGAAGAAGGATCTGTCACAGCCCACGCAAAATCCGGGACTGCCCCTCCAACTGCTATAAAGCGATCACAGATGGCAAACGTGGAGCCACCGCTGAAGTGTAACACGTGCAGCGCCTGGATCTCCTCCGCGGCTTTGACAGCTGGCAGCCCGGACACGCAGGCGCCCCGGCCGGCCGAGCCCACTCCAGCCCGCCGCTCGGCCCCCCGGCGGGGCTCGCAGCCAGTCTGTCCATGCGTGGCGCCTCCAGTCCAGGCATCCGGGCCAGACCCACCGCGCCGCCTTCACTTCGGACAGGCACGGGGCCTTCAATGCATGGGCAAAAAGATCcattag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36401 lncRNA downstream 114619 45034445 ~ 45036413 (-) True G29081
TU36275 lncRNA downstream 462857 44682437 ~ 44688175 (-) True G28976
TU36278 lncRNA downstream 469263 44681425 ~ 44681769 (-) True G28978
TU36277 lncRNA downstream 470990 44679816 ~ 44680042 (-) True G28977
TU36273 lncRNA downstream 484455 44666343 ~ 44666577 (-) True G28974
TU36509 lncRNA upstream 125303 45353807 ~ 45354086 (-) True G29170
TU36523 lncRNA upstream 191086 45419590 ~ 45420462 (-) True G29182
TU36533 lncRNA upstream 233275 45461779 ~ 45462530 (-) True G29192
TU36551 lncRNA upstream 261503 45490007 ~ 45490890 (-) True G29206
TU36650 lncRNA upstream 371055 45599559 ~ 45714037 (-) True G29249
AMCG00008184 mRNA downstream 55081 45092784 ~ 45095951 (-) True AMCG00008184
AMCG00008182 mRNA downstream 58912 45087197 ~ 45092120 (-) True AMCG00008182
AMCG00008183 mRNA downstream 80061 45062781 ~ 45070971 (-) True AMCG00008183
AMCG00008180 mRNA downstream 153116 44997485 ~ 44997916 (-) True AMCG00008180
AMCG00008176 mRNA downstream 167287 44971340 ~ 44983745 (-) True AMCG00008176
AMCG00008191 mRNA upstream 4885 45233389 ~ 45234479 (-) True AMCG00008191
AMCG00008190 mRNA upstream 6555 45235059 ~ 45239415 (-) True AMCG00008190
AMCG00008189 mRNA upstream 43911 45272415 ~ 45280354 (-) True AMCG00008189
AMCG00008196 mRNA upstream 66796 45295300 ~ 45302966 (-) True AMCG00008196
AMCG00008197 mRNA upstream 108950 45337454 ~ 45339881 (-) True AMCG00008197
TU36269 other downstream 732836 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2386378 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3301142 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 3949207 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4133784 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 822191 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 1252442 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 2485430 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2895421 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 3052838 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile