RNA id: AMCG00008194


Basic Information

Item Value
RNA id AMCG00008194
length 2188
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00008194
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45340574 ~ 45343914 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTTGACAGTGGTGACAACATGGCCGCCGCCGTGCTCGGAGAGGGGCTGCCGGCGAACTCCGCCTCTGCCGGGCCGGGCGCCGCGGTCAGTGTCCGGTGTGTGGGAGACACAGACGGGTCAGCCGCTGTCACTCCGGACCTCCGGAGCATCTTGGTTACCAGCGTTTTGAACCTGGAGAAGCTGGACGCGGACCTGTACAGGGGAAAGCACCACTGGGTTCCCCGGACGCAGCGGCTGTTTGGCGGCCAGATCATTGGCCAGGCTCTGGTGGCGGCGGCTAATTCGGTCAGCGAGACCGTCTTCGCCCACTCGCTGCACTGCTACTTCGTACGAGCAGGGGACCCCAAGGTTCCTGTCCTGTACCAGGTGGACCGGACGCGGGATGGCAGGAGCTTCTGTGTTCGCTCGGTCAAAGCCATTCAGCACGGGCAGCCCATTCTCATTTGCCAGGCCTCCTTTCACCTGCTCCAGCCCAGCCCCATGCAGCACCAGTTCACCATGCCCACCGTGCCTCCTCCCGAGGAGCTGCTGACGGTGGAGGAGCTCATCCAGAAATACCTCAGAGACCCGAACCTGGCAGAGAAGTCCAAGCAAGGCCTGAATTATATCCTGGCTGAGGAGGTGCCAATTGAAATCAAGCCGGTGAACCCCCCAGATTTTTACCGGAGAATTGTCATGGAGCCCAAAAAGCTGTTCTGGGTTCGAGCCCGCGGACATATCGGCGAGGGCGATATGAAGCTGCACTGCTGCGTTGCGGCCTACGTGTCAGATTACTCGTTCCTGGGCACGGCGCTGTTGCCCTACCCAGAATCCCGAGTGCATTTCTCCGCCTCTCTGGACCATGCCATGTGGTTCCACAGCACCTTCCGGGCCGACGAATGGATGCTGTATGAGTGTGAGAGTCCCTGGGCAGGGGGCAGCAGGGGGCTGGTCCAGGGCAGACTGTGGAGGCAGGATGGGGTCCTGGCAGCATCCTGCGCACAGGAGGGGGTCCTGCGAGTCAAACTGGCGGCCAATCAGAGTAAGCTGTAGGGAAGAGGCCATTCCTGACACCACGGAGGCAAACTTGGAAGCAGTGTGTGGCCAGGAGAGCAAAAAAGTCTGGGTGCTGTGTGGTGAACCCTGATGCATGCCTTCCCTCACGACAgaggaaattacatttatttaggaAATGGAAATTTGAAAAGTAAGACCAAGATGGAAAATCGGGTAACACGGTTGTCTAATTCTGCCATCTAGTGGCAGATCTGtcaattaaaagtataattctCCTAAAGGCtattactaattactaattCAGTGCTTATACTGAAACATAGTTCTCAGGCGTTATACTCTGTAAGGGCAtaaccattattattacattatattctTTCTGATACCCCTGCACTATGAAAGAAGTAGTGTGAATTTGGaaatagtttgttttgaatgtttcaaGTTAAGGCTGAGAAGCACAGATATGTAACAGACCAAAATAGTTCTCTCTTAATGTTGAAGGTGAATTATCTAGTTTACTATATGTCAGGTATGTAGAAAAGAAGTGAATTCTGGTTATTCCTTTGTGAATTGTCCATTTTCCATACATTGAAGTTCTCTAAGGATTACTTGGCAgaaaaatgttggaaaaatagtttaaaaagaaatggcaTAGTAAGTTAAGGGTAAATTACCATCTAATGGTACTGTAGGAACAATATTGTCATCTAGGTTAGCTGTGCTGAAACTGAGAGCTTGCAATCATTAATTTCAGACTTCTTGGATCACAGAGTTGCTTAGCAAAGCCTATCTATGGTCACACAATATTTGCTTGCTTTAATCAAATGTtctatgtaaattatattttcataagaAACCCATGACCATTACACTAATGTCTAGGATAATTCTGAGCTTCATGAACGGGCATGTTACAGCCACCTCCATTGGCTACTTAGTTCCTTTTGTCTGCACTAATTGTAGTTTTGAGGAGAATGTCtgcacagaaaatgtttttgcatttaccAGTGAATCCTGCTGAACAGAAGACAGAAGTTacttcattattaaaatatattaagaggAAGAGAAACTAGTTTTTTgaagaaataagaacataacataTCTGAGAATCTCAAACTCTCTAAAGATTGGCTACAGGAAATTAGAGATGTCACTACAGTGCCAGAAATTATTTTTGGAGGGCTG

Function

GO:

id name namespace
GO:0006637 acyl-CoA metabolic process biological_process
GO:0047617 acyl-CoA hydrolase activity molecular_function

KEGG:

id description
K11992 ACOT8, PTE; acyl-CoA thioesterase 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36298 lncRNA upstream 523911 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA upstream 542111 44795924 ~ 44798463 (+) True G28995
TU36252 lncRNA upstream 590666 44691541 ~ 44749908 (+) True G28956
TU36226 lncRNA upstream 1283966 44053965 ~ 44056608 (+) True G28931
TU36138 lncRNA upstream 1444623 43894185 ~ 43895951 (+) False G28862
TU36485 lncRNA downstream 9851 45353716 ~ 45354079 (+) True G29148
TU36491 lncRNA downstream 34146 45378011 ~ 45378353 (+) True G29153
TU36579 lncRNA downstream 195904 45539769 ~ 45542206 (+) True G29223
TU36682 lncRNA downstream 382118 45725983 ~ 45734261 (+) True G29271
TU36703 lncRNA downstream 544084 45887949 ~ 45888412 (+) True G29291
AMCG00008193 mRNA upstream 4320 45328163 ~ 45336254 (+) True AMCG00008193
AMCG00008187 mRNA upstream 70742 45245953 ~ 45269832 (+) True AMCG00008187
AMCG00008186 mRNA upstream 98222 45239938 ~ 45242352 (+) True AMCG00008186
AMCG00008188 mRNA upstream 107873 45228642 ~ 45232701 (+) True AMCG00008188
AMCG00008185 mRNA upstream 189238 45147397 ~ 45151336 (+) False AMCG00008185
AMCG00008199 mRNA downstream 32100 45375965 ~ 45399868 (+) True AMCG00008199
AMCG00008200 mRNA downstream 57004 45400869 ~ 45408463 (+) True AMCG00008200
AMCG00008204 mRNA downstream 72412 45416277 ~ 45423427 (+) True AMCG00008204
AMCG00008205 mRNA downstream 100073 45443938 ~ 45468459 (+) True AMCG00008205
AMCG00008198 mRNA downstream 140765 45484630 ~ 45486967 (+) True AMCG00008198
TU36420 other upstream 168746 45149429 ~ 45171828 (+) True AMCG00008185
TU36366 other upstream 304158 45023148 ~ 45036416 (+) True AMCG00008177
TU35919 other upstream 2039152 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 2191531 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 2232332 43105713 ~ 43108242 (+) True G28636
TU36524 other downstream 96648 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 924026 46267891 ~ 46268327 (+) True G29353
TU36848 other downstream 2236348 47580213 ~ 47586235 (+) True G29418
TU36851 other downstream 2251239 47595104 ~ 47595686 (+) True G29421
TU36868 other downstream 2283431 47627296 ~ 47671421 (+) False AMCG00008232

Expression Profile