RNA id: TU36476


Basic Information

Item Value
RNA id TU36476
length 1694
RNA type TUCP
GC content 0.44
exon number 3
gene id AMCG00008194
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45340574 ~ 45343914 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGCCGCCGTGCTCGGAGAGGGGCTGCCGGCGAACTCCGCCTCTGCCGGGCCGGGCGCCGCGGTCAGTGTCCGGTGTGTGGGAGACACAGACGGGTCAGCCGCTGTCACTCCGGACCTCCGGAGCATCTTGGTTACCAGCGTTTTGAACCTGGAGAAGCTGGACGCGGACCTGTACAGGCGAGGGCGATATGAAGCTGCACTGCTGCGTTGCGGCCTACGTGTCAGATTACTCGTTCCTGGGCACGGCGCTGTTGCCCTACCCAGAATCCCGAGTGCATTTCTCCGCCTCTCTGGACCATGCCATGTGGTTCCACAGCACCTTCCGGGCCGACGAATGGATGCTGTATGAGTGTGAGAGTCCCTGGGCAGGGGGCAGCAGGGGGCTGGTCCAGGGCAGACTGTGGAGGCAGGATGGGGTCCTGGCAGCATCCTGCGCACAGGAGGGGGTCCTGCGAGTCAAACTGGCGGCCAATCAGAGTAAGCTGTAGGGAAGAGGCCATTCCTGACACCACGGAGGCAAACTTGGAAGCAGTGTGTGGCCAGGAGAGCAAAAAAGTCTGGGTGCTGTGTGGTGAACCCTGATGCATGCCTTCCCTCACGACAgaggaaattacatttatttaggaAATGGAAATTTGAAAAGTAAGACCAAGATGGAAAATCGGGTAACACGGTTGTCTAATTCTGCCATCTAGTGGCAGATCTGtcaattaaaagtataattctCCTAAAGGCtattactaattactaattCAGTGCTTATACTGAAACATAGTTCTCAGGCGTTATACTCTGTAAGGGCAtaaccattattattacattatattctTTCTGATACCCCTGCACTATGAAAGAAGTAGTGTGAATTTGGaaatagtttgttttgaatgtttcaaGTTAAGGCTGAGAAGCACAGATATGTAACAGACCAAAATAGTTCTCTCTTAATGTTGAAGGTGAATTATCTAGTTTACTATATGTCAGGTATGTAGAAAAGAAGTGAATTCTGGTTATTCCTTTGTGAATTGTCCATTTTCCATACATTGAAGTTCTCTAAGGATTACTTGGCAgaaaaatgttggaaaaatagtttaaaaagaaatggcaTAGTAAGTTAAGGGTAAATTACCATCTAATGGTACTGTAGGAACAATATTGTCATCTAGGTTAGCTGTGCTGAAACTGAGAGCTTGCAATCATTAATTTCAGACTTCTTGGATCACAGAGTTGCTTAGCAAAGCCTATCTATGGTCACACAATATTTGCTTGCTTTAATCAAATGTtctatgtaaattatattttcataagaAACCCATGACCATTACACTAATGTCTAGGATAATTCTGAGCTTCATGAACGGGCATGTTACAGCCACCTCCATTGGCTACTTAGTTCCTTTTGTCTGCACTAATTGTAGTTTTGAGGAGAATGTCtgcacagaaaatgtttttgcatttaccAGTGAATCCTGCTGAACAGAAGACAGAAGTTacttcattattaaaatatattaagaggAAGAGAAACTAGTTTTTTgaagaaataagaacataacataTCTGAGAATCTCAAACTCTCTAAAGATTGGCTACAGGAAATTAGAGATGTCACTACAGTGCCAGAAATTATTTTTGGAGGGCTGCAGAAGAgatgtaatgttattttctgtacaaataaaattactttGTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36298 lncRNA upstream 523933 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA upstream 542133 44795924 ~ 44798463 (+) True G28995
TU36252 lncRNA upstream 590688 44691541 ~ 44749908 (+) True G28956
TU36226 lncRNA upstream 1283988 44053965 ~ 44056608 (+) True G28931
TU36138 lncRNA upstream 1444645 43894185 ~ 43895951 (+) False G28862
TU36485 lncRNA downstream 9802 45353716 ~ 45354079 (+) True G29148
TU36491 lncRNA downstream 34097 45378011 ~ 45378353 (+) True G29153
TU36579 lncRNA downstream 195855 45539769 ~ 45542206 (+) True G29223
TU36682 lncRNA downstream 382069 45725983 ~ 45734261 (+) True G29271
TU36703 lncRNA downstream 544035 45887949 ~ 45888412 (+) True G29291
AMCG00008193 mRNA upstream 4342 45328163 ~ 45336254 (+) True AMCG00008193
AMCG00008187 mRNA upstream 70764 45245953 ~ 45269832 (+) True AMCG00008187
AMCG00008186 mRNA upstream 98244 45239938 ~ 45242352 (+) True AMCG00008186
AMCG00008188 mRNA upstream 107895 45228642 ~ 45232701 (+) True AMCG00008188
AMCG00008185 mRNA upstream 189260 45147397 ~ 45151336 (+) False AMCG00008185
AMCG00008199 mRNA downstream 32051 45375965 ~ 45399868 (+) True AMCG00008199
AMCG00008200 mRNA downstream 56955 45400869 ~ 45408463 (+) True AMCG00008200
AMCG00008204 mRNA downstream 72363 45416277 ~ 45423427 (+) True AMCG00008204
AMCG00008205 mRNA downstream 100024 45443938 ~ 45468459 (+) True AMCG00008205
AMCG00008198 mRNA downstream 140716 45484630 ~ 45486967 (+) True AMCG00008198
TU36420 other upstream 168768 45149429 ~ 45171828 (+) True AMCG00008185
TU36366 other upstream 304180 45023148 ~ 45036416 (+) True AMCG00008177
TU35919 other upstream 2039174 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 2191553 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 2232354 43105713 ~ 43108242 (+) True G28636
TU36524 other downstream 96599 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 923977 46267891 ~ 46268327 (+) True G29353
TU36848 other downstream 2236299 47580213 ~ 47586235 (+) True G29418
TU36851 other downstream 2251190 47595104 ~ 47595686 (+) True G29421
TU36868 other downstream 2283382 47627296 ~ 47671421 (+) False AMCG00008232

Expression Profile