RNA id: AMCG00008195


Basic Information

Item Value
RNA id AMCG00008195
length 2854
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00008195
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45344179 ~ 45350087 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCACTGCCTCCCGAATTCCGATCCCGATTGATTGTGTCCAACTTCCACTCGGTCCTGGCCGGAGTGCAGTGACCGATGCGCCGAGTCTGGGATCGCTAGCAGCCGAGCAGAACCACTTCCCGGGAGAGTGGCCTCGGAGAATGTGTGGCTGCAAGGATGGCCTCTAAGCTCCTGGACAGACTGAAGCGCACGCTGTTCAAGGACGGGGTGGCCACGGCGGAGCTGAGCGGCACGGAGGACTTTCCCGAGAGCTCGGAGTTGGACGATGACACAGACTGCATCTCGTCCCGGCTCAGTGGCACCCTCAGCTTTGAGGGGGAGAAGGGGCTCGAGACAGAGGACCCCGGGGAGGCTTCGGACCTGGACAGCGACTCGGACTTCCTGGGAGAGTCCACGGAGAATGGGATGTGCAGCACAGATGCCAGCCCTGTGGGTCCGCCAGTCAGCCAATCACTGCTGACACGGCAGCTGCAGGACAGCTGGCGTAGCTCTCGGTGCCGGACCGTTGTGGAGAAGCTGGTGTTTGAAGTGACCGATGCCAGTGTGGTGCAGGAAGGGACCTCCAAATACGTGCTCTACACTATCCATGTGATCCGTTCAGGAGCGTTCGACAAGACCCCGGCCATCATCACCCGCCGCTACACGGACTTCGAACGTCTGCATGGCCGGCTGCGGCGTTGCTATGCGGACGAGATGGAGGGTGTGTCGTTCCCTCGCAAGAAGCTTCGCAGGAACTTCGTGGCGGAGACCATCGCCAAGCGCAGCCGAGCCTTCGAGCAGTACCTCACGCACTTGCACTCGCTGGGGGAGCTGCGGCGGGCGCGCATCTTCCTCGAGTTCTTCTACCTGGGTGACCTGAGGATGGGGCAGAACCTGCTTCGGGCCGGGCAGTACCAGGAGGCCTTAGGATCTTTGCTAAATGCCTTGAGGCTGCAGGAGAAACTGAGCGGGCAGCAGCAACATCATCTTCAACAGCCACAAAGAGGTCATTGGTTTTTCACCCTGTCGGCCCTGGCTGCCTGTTTTCAGGAGTTAGAtcagctggaggaggcccaggaGAACTGCGAACGAGCGCTGCAAGATCTAGCACCTTCCCAGGATACTGCACATCCGAAGCAGTTCCACCCAGCCTTCATCCCACTCCTGCAGGCCAATGTCAGGCTCTCCTGGAAGATCTCTAAGGACAAGCGCAGGTGGGAGGCCCTCCTGCAGGAGATGAGGGACTCTGGGGTGGATATCGGTAACCAGCCCAGCCTCAAAGAGTACCTGGTGAAGGAGGTGCTGGAGGACAGCGATGGAGGGAGCAGACACAAGGCCAAAGAGGAGCTGGCCTAGGCCACAAGAGCGCTTTAGAAACATCTAATATTTGGACACCTTGGAAACGAGAAAGGAAAACTTGTTTGTGATTTCAAAATACTTCggatattacttttttttttttcatgttacaCAAATGGGTCAAAAAATCGTACGGCTGCTTTTTGAAATTGTAGGTAAAAGGcgaatttaatatttattaaaatgactgaTTTGTGCTCTTGGAAGAAGGGATAGCTGACTAAATAAATGGGGGAAATGCATTAACTAAGGGATGAAAAGGGAATTTCAATTACAAACTAAATGTACATGACATTCAGACCTGGGAACATGTACTCtgagtagtgtgtgtgttttctattaGTATTGGGAATACTACCATGCATTAAGGAACTAATATTCAGTAATGGAATACCTAGTCTGTGAACATAGTGATTGAAAAGCACGAGATACGATTGTGTGCACATTTGATTAAGGTGTTTACGTTTCTGTCCATTTCATTTGACACTAAATTACACTTGTGATGTATTGAGGCCTTTTGTTACTGAAGAAGAAACTATTCTCCACTAAATGGATAAATGAGGGATTTTCACTCCATCTACCAACTGAAGTGCACGGCCTCATCTGTGACGATGATCCAAAAAACGTACTTTTAACTGGGACTTGATTCTGATTGCTGACCAATTTCTCACTGCAGTTGGAGTTGACAAATGTTATGGAAAAATGTGGAGTCAAACCTagttgtcttatttatttttgtgtgcatgtttattatttgtatttgtttggtttgcagTTCAAGTAGTAGGGTTGTTACTGattagtaaaacacatttattttacattatatacaagAATGGGAATTGGCTCTTTGCTCCACCTATAGTCACTAATCTGCATTTTGTCCTCATAATCTGAAGTTTTATATTGAACATTAtagttattaattatatttcatgaaACCTGTTATCTTTTGCTATTTCCAAGAACTAAGAATAAGGGAAAGCATACcttgctttttttgttatagATTCACATACTGTAGTTAAATATAATACACCTAGTGCTGACCTCtttgtaaagcatttaaaaaaagaaatgcaatgagCTGTATATCAATACTGAAGTCTGTAACAGCATTGAAGAGCAACGTTAAATGAATGAGGGTGAATTTTTCTCAGTGGCAATGTAAGAAGTGCCTTGGACTGGACAATGTCgcccttctctttctttctgcagTAAAAGCAGTATTTAACACTTAGTCCTCATTTTCACaagtgatatatttttaaaaattttatCTTGCAACTTCACTTAACAGCAGATGGTATTCACACAGTCTTTTTGTGTACATGTAAGATTTCTATGAAATTGAACTTTGTATAATGTTTACACTGTttggattatattttaatggaaataaatcttTAAGAGTTATTCAAGTAtgaatttaaaagcaatgcTTTAGCTCTGTTATTGGTTTCATGAAAAGAtgtataacaaattaaaactaacCAGCTCCAGTGAAGCATTTAC

Function

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17932 SNX21; sorting nexin-21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36439 lncRNA downstream 192852 45149501 ~ 45151327 (-) False AMCG00008192
TU36401 lncRNA downstream 307766 45034445 ~ 45036413 (-) True G29081
TU36275 lncRNA downstream 656004 44682437 ~ 44688175 (-) True G28976
TU36278 lncRNA downstream 662410 44681425 ~ 44681769 (-) True G28978
TU36277 lncRNA downstream 664137 44679816 ~ 44680042 (-) True G28977
TU36509 lncRNA upstream 3720 45353807 ~ 45354086 (-) True G29170
TU36523 lncRNA upstream 69503 45419590 ~ 45420462 (-) True G29182
TU36533 lncRNA upstream 111692 45461779 ~ 45462530 (-) True G29192
TU36551 lncRNA upstream 139920 45490007 ~ 45490890 (-) True G29206
TU36650 lncRNA upstream 249472 45599559 ~ 45714037 (-) True G29249
AMCG00008197 mRNA downstream 4298 45337454 ~ 45339881 (-) True AMCG00008197
AMCG00008196 mRNA downstream 41213 45295300 ~ 45302966 (-) True AMCG00008196
AMCG00008189 mRNA downstream 63825 45272415 ~ 45280354 (-) True AMCG00008189
AMCG00008190 mRNA downstream 104764 45235059 ~ 45239415 (-) True AMCG00008190
AMCG00008191 mRNA downstream 109700 45233389 ~ 45234479 (-) True AMCG00008191
AMCG00008202 mRNA upstream 59176 45409263 ~ 45414813 (-) True AMCG00008202
AMCG00008201 mRNA upstream 71678 45421765 ~ 45435361 (-) True AMCG00008201
AMCG00008203 mRNA upstream 117096 45467183 ~ 45484122 (-) True AMCG00008203
AMCG00008209 mRNA upstream 148019 45498106 ~ 45503562 (-) True AMCG00008209
AMCG00008206 mRNA upstream 153955 45504042 ~ 45518710 (-) True AMCG00008206
TU36269 other downstream 925983 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2579525 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3494289 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4142354 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4326931 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 700608 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 1130859 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 2363847 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2773838 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2931255 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile