RNA id: AMCG00008199


Basic Information

Item Value
RNA id AMCG00008199
length 2638
RNA type mRNA
GC content 0.47
exon number 18
gene id AMCG00008199
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45375965 ~ 45399868 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAGCCGAAGTCCAGGCTGGCTTCCCCCAGCACTGAGGCCTGGCGCTGGGGACACGGGGGCGCCTCCCGACCACCAAGGAGAAGGAGGGGAAGAAGCCTCTGTCATTGCACAGGGAAAGAGTGACAGCACAAGGGGGTGGGGTAAAGGGGTGAATTTGATCTTTCAGACTGAAGACACAATGAACAAGTGGTGGCTCTTGGGTCTCCTGGCTCTCTGCCCCCTGACCTTGTGTACAAACCCTGGTGTCACTGGGCGACTGACACAGAAGGGACTGGAGTATGGCCGGCAGATTGGAATGGCTGTTCTGCAGAAGAGACTCCAATCTATTAAGATTCCAGACATTTCAGGGAAAGTAAAGGTGAAGCATGCTGGGAAGGTGAAGTACAGCGTGTCTGGGATGAGAATTGTGAATCTAGGTCTCCCACAATCCAGTCTGGGGCTGGTGCCCAGCTCAGGGCTCAAACTATCCATCGGCAATGCCTTCATCAAAATAAAAGGCAGATGGCGAGTGAAATACCTGAGAGTCATAAAAGACAGCGGCTCCTTTGACCTGTCTGTCAGCGGGCTGAGCATTTCAGCAGGCATGGGCGTGTCCAGGGACGGGACAGGGCATCCGGCGGTCAGCAGTGCCAGCTGTTCGGCCATCGTCAGGAGTGCTAAAGTCAAGTTTCACGGAGGGGCCAGCTGGCTCTACAACCTCTTCAGTAGGTATATTGACAAAGCTCTGCGCAAGTCTATTAAAAAACAGCTTTGTCCCTTGGTCGCTAAATCCATAGAAGGGTTGAATCCTCGGCTGCAGACATTGAATGTGCTGGCAAAAGTGGACAAGTATTCAGAGATTCAATACTCCCTGGTGTCTTCCCCCTCGGTGACTAAGAACTACATTGATCTGTACCTAAAGGGTGAGTTCTATGCCATTGCACACCATCAGGAGCCTCCCTTTACGGCCCCAGCCTTCTCCCTCCCAGACCAGGCCAAAAGTATGCTGTATTTGGGATTGTCCCAATATACACTCAACACTGCTGGCTTTGTCTACAACACCTTAGGACGGCTCAGCATTGACATCACAGACGACATGCTTCCCAAAAGCTCCCCCTTCCGCCTCAACACCAAAAGCTTCCAACTGATCATTCCTGAGATTGAAAAGAAGTATCCCAACATGCCAATGAAATGTGTTGTGAAGACCAGCAAGCAGCCACTTATCACCTTTGAGCCCAACAATGCAACTCTCCAGGCTGCTGGCACAGTCACTGCCTATGCCATCCAGCCTAACTCCACACTCGCCCCACTCTTTATTATCAATGTGGTCACTAGTGTGAGTGCTAAGGTCTACATCACTGGGACGAACATAGCTGGGTCTGTGTCACTGAATGGGTTGGAGATATCACTGGTGGAAAGCTACGTGGGACCTTTTCAGGTCCAAGTCCTCAATAACGTCGttccattcattttgaaaacgGTTGTTCTACCCCAGGTTAATgCATACCTCAAAAAGGGCTTTCCTCTTCCAACGCTCAGGAAGATGAGCCTTGTGAATCCCCAGATACAGATACAAAAGAACTACCTGTTGATCGCAACCGACGTTCGCTTCCAACCCTGAGTCCTGCGTGACATCAGCGTTCTGTTCAGATGCCTGCTGCCAATCACTGTCACATAGTAACCACTGCTGAAATGGATGGATTTTCCTTTACTTGCTGATTAttaataaaagcacattttaacaaTGCAATTGTTGGTGTAAGAGAGCATCAGACGTGGTCAATGCAATGCCAAATCACATGGGGTCAATGAAATGAACAATATACATTAATCTAGGGGAATCACAAGTTTGACCTACCCATGTACAGATCGCAAAGTACAGATCTCTACCTAATTTTGTGGTAATTGAGTGCTGGAAGCCACCCTCTAGTATTTatcaatcaaaacacaattgGGCATAACTTGTGATTCACAGGTGggtcaaatatttaattttgtctagCCCTAAGAGTGGAGAACCATACTATACTAACTGTATATTATCAGAATCTGTAAAGCCCAGACAAGTAGTTTGTATTGAATCACAAACCAAAGCCAGTTATGTTACGCAAGATGAATGCAAGGGAATTTCCAAGTGAGTTTCAAACATATGTGTATCAGCTTAGTGCTCCAAAGTGAAGCCAGGTGGAAAGCACAGAAATGGAGGTGGGGTGGGAGGATGAAAGACAGCAGGGGATAATTGGGTTCTCTGTATTCAAGCAATCGTAACCTCTGTAGCTTCTTGGTTGTCTGTGATTAGGGGTGCTGACTGTTGTATTCACATTCAATCCTGATTGCTGTACTAGAGAGCCCCCTCTCCActgcccttcctccagagcccacccCTAAGAGGTGGAATCACCCTGTCCCCCAAGTCAGGACCACACAGTCCCTGAACACCATCCAGCGTCTGCTCATGATACACCTGTCAAGACTCTACCTGTAATACTGCAACCTAATCTATTGGACAACGCATGCTTCTTGAGAAAACTGTCAACCAGGGCAATTCTGTCTTAATGTCACCATATATAAAGGCAAAGGGGCTTTTTTGAGAATATCAACAAAATGAACTTGGAGAACTTTAATTACTGTGTtggtatgtatgtaaataaacaggC

Function

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36485 lncRNA upstream 21886 45353716 ~ 45354079 (+) True G29148
TU36298 lncRNA upstream 559302 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA upstream 577502 44795924 ~ 44798463 (+) True G28995
TU36252 lncRNA upstream 626057 44691541 ~ 44749908 (+) True G28956
TU36226 lncRNA upstream 1319357 44053965 ~ 44056608 (+) True G28931
TU36579 lncRNA downstream 139901 45539769 ~ 45542206 (+) True G29223
TU36682 lncRNA downstream 326115 45725983 ~ 45734261 (+) True G29271
TU36703 lncRNA downstream 488081 45887949 ~ 45888412 (+) True G29291
TU36736 lncRNA downstream 693040 46092908 ~ 46093489 (+) True G29320
TU36779 lncRNA downstream 868807 46268675 ~ 46268989 (+) True G29355
AMCG00008194 mRNA upstream 32100 45340574 ~ 45343865 (+) True AMCG00008194
AMCG00008193 mRNA upstream 39711 45328163 ~ 45336254 (+) True AMCG00008193
AMCG00008187 mRNA upstream 106133 45245953 ~ 45269832 (+) True AMCG00008187
AMCG00008186 mRNA upstream 133613 45239938 ~ 45242352 (+) True AMCG00008186
AMCG00008188 mRNA upstream 143264 45228642 ~ 45232701 (+) True AMCG00008188
AMCG00008200 mRNA downstream 1001 45400869 ~ 45408463 (+) True AMCG00008200
AMCG00008204 mRNA downstream 16409 45416277 ~ 45423427 (+) True AMCG00008204
AMCG00008205 mRNA downstream 44070 45443938 ~ 45468459 (+) True AMCG00008205
AMCG00008198 mRNA downstream 84762 45484630 ~ 45486967 (+) True AMCG00008198
AMCG00008210 mRNA downstream 88764 45488632 ~ 45488966 (+) True AMCG00008210
TU36476 other upstream 32051 45340596 ~ 45343914 (+) False AMCG00008194
TU36420 other upstream 204137 45149429 ~ 45171828 (+) True AMCG00008185
TU36366 other upstream 339549 45023148 ~ 45036416 (+) True AMCG00008177
TU35919 other upstream 2074543 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 2226922 43146773 ~ 43149043 (+) False AMCG00008120
TU36524 other downstream 40645 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 868023 46267891 ~ 46268327 (+) True G29353
TU36848 other downstream 2180345 47580213 ~ 47586235 (+) True G29418
TU36851 other downstream 2195236 47595104 ~ 47595686 (+) True G29421
TU36868 other downstream 2227428 47627296 ~ 47671421 (+) False AMCG00008232

Expression Profile