RNA id: AMCG00008200


Basic Information

Item Value
RNA id AMCG00008200
length 2013
RNA type mRNA
GC content 0.43
exon number 14
gene id AMCG00008200
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45400869 ~ 45408463 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCCAGTGGTGGCTCCTGTCCCTACTGGCTCTTTGCCACCTGTCTCACTCCTCAAACCCGGCCATCACATTGAGACTCACAAGGAGAGGAATGAACTATGGCCGCAATGTGGGCATGAACATCCTGCGGCGAGAGCTGCTAAACATGAAGATACCACCTCTGTCCGGGACTCTGCCAGCCCCTGTAATTGGCAATATACATTTCCGAATTTCAAGAGAGGACTGGGGTACCTATGAGCTGTCCATCAGCAAGATTACCATTTCAGCAACTATTGTGTTTGCCATGGACAATTCAGGACGTCCCACGGTGAGCAGTGCCAGCTGCAATTCCGACATCAGTGATGTCAGCTTCAGCTTTTACGGTGGCGCAAGCTGGCTGTACAACCTGTTCACTGGCTACATTAACAGTAACATTCAAACAAAGGCAAATGCTGACAAATATGCAGGGATTGATTACTCCATGGTCATGAATCCAAGGGCAACCAGTAACTACATTGATCTGAATTTGAACGGCCAGTTCTACAACAACAGGAAATACCAGGAGCCCCCTCTCAGTCCACCTTACGTCTACATCCCTTACTCCAGCAGCAGCATGTTGTACATCGCAATGTCAGAGTACACGGCCAACACCGCTGGCTTTGTCTACTTCAGCACAGGACAGCTGTACGTCGACATCACCGATTACATGATTCCAAGGAGTTCTCTTCTAAGGCTCAACACCAAATCAATTCTTCAATTAATAATGCCTGAGATTGCAGATCAGTTGCCTGCCTATCCAATAAAGCTGCAAATAAAAGCCAACAGACAGCCATCTGTAACCTTTCAGCCCAACAATATAACATTGCAAGTTTTTGGCTCCATTACTGCCGCATTGCCTGGCACCACCCTCGGCAACCTTTTCATTCTGAATGTGACTGCTAGTGTCGATGTCAAGATTCAGATTTCTGCAATTAAACTGTTTGGACGGACATCCCTTAACAGAATGAGGTTGTCCTTCGGCAGTGACTACATAGAGTTACTTAAAGTCCTACCGGCTCCCAAGATCTTGCGCGTGGATAAGGAAACACAGGCACTAAATATAGCCCGACTGATCGAGTTGCTGCAGCCCCTTCTTGAACAGGCTGTACAAGCTATAGTGATGCCCATGGTGAATGCACAACTCAGCAATGGATTCCCTCTGCCATCGTTTAGCTGGATGCAGTTTGTTAACCCACAGCTTCAGGTGAAGCAGagTTACATACTGATCGGGACCGATGCTCATTATACGGGTTGACTTCAGGGAGCCGGCAGTAGGGTCCTGATGAGACTCAAACACAACAAACCTCCGGGCTACAAATCTAACTTTAATCACATCTGTTTCAGTGCTTATAAACACAAAGTAACAATGTTACAAACAGTGTTAAACTTATACACAACATTAGCTTTTCTTTATATACAGTCGTGAATCTCATGTTATTTACTTTCCTCGACTCAAATAGCAGTTAGGCACTatcttgatgtttttgttttctcatctgtgtttgttttatacaatgttGATAAAACACGATTAGAATCTGGTGAACCTTGTTTCTTCATGTTACCTTCATTAAACAGATCTGTGCATATTCTCTCCaggtttcctttcctttcctttgcaCAATCTAGATCATAAAACCAAAGCACAGAGATCTTGATATGGGACATTCTGAAATAACAGTAATAGTATGTTGTGTAGAATGGTATGGTATGGTATTTGATAGCTCTCAACACAAGcgtaaaaacaaattaaattaatgttgtatctcaaaaatacaaaaggagtggagaggagagaggattAAAGCCTTCCTTatgaatcacaaaaacaaaccattgtTTTTTCAGGAAGCCTTAAGCTGAAGAGAACAGATGTTTCAGGATTAAGAAGGCGATATGCAACATGTGAAACTGCATTGCACTTTTATTGGCCTATCAGTATTAGAGCccgaccgatacaggttttttgggtccgatacctgtacgttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36491 lncRNA upstream 22516 45378011 ~ 45378353 (+) True G29153
TU36485 lncRNA upstream 46790 45353716 ~ 45354079 (+) True G29148
TU36298 lncRNA upstream 584206 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA upstream 602406 44795924 ~ 44798463 (+) True G28995
TU36252 lncRNA upstream 650961 44691541 ~ 44749908 (+) True G28956
TU36579 lncRNA downstream 131306 45539769 ~ 45542206 (+) True G29223
TU36682 lncRNA downstream 317520 45725983 ~ 45734261 (+) True G29271
TU36703 lncRNA downstream 479486 45887949 ~ 45888412 (+) True G29291
TU36736 lncRNA downstream 684445 46092908 ~ 46093489 (+) True G29320
TU36779 lncRNA downstream 860212 46268675 ~ 46268989 (+) True G29355
AMCG00008199 mRNA upstream 1001 45375965 ~ 45399868 (+) True AMCG00008199
AMCG00008194 mRNA upstream 57004 45340574 ~ 45343865 (+) True AMCG00008194
AMCG00008193 mRNA upstream 64615 45328163 ~ 45336254 (+) True AMCG00008193
AMCG00008187 mRNA upstream 131037 45245953 ~ 45269832 (+) True AMCG00008187
AMCG00008186 mRNA upstream 158517 45239938 ~ 45242352 (+) True AMCG00008186
AMCG00008204 mRNA downstream 7814 45416277 ~ 45423427 (+) True AMCG00008204
AMCG00008205 mRNA downstream 35475 45443938 ~ 45468459 (+) True AMCG00008205
AMCG00008198 mRNA downstream 76167 45484630 ~ 45486967 (+) True AMCG00008198
AMCG00008210 mRNA downstream 80169 45488632 ~ 45488966 (+) True AMCG00008210
AMCG00008211 mRNA downstream 190737 45599200 ~ 45638789 (+) True AMCG00008211
TU36476 other upstream 56955 45340596 ~ 45343914 (+) False AMCG00008194
TU36420 other upstream 229041 45149429 ~ 45171828 (+) True AMCG00008185
TU36366 other upstream 364453 45023148 ~ 45036416 (+) True AMCG00008177
TU35919 other upstream 2099447 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 2251826 43146773 ~ 43149043 (+) False AMCG00008120
TU36524 other downstream 32050 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 859428 46267891 ~ 46268327 (+) True G29353
TU36848 other downstream 2171750 47580213 ~ 47586235 (+) True G29418
TU36851 other downstream 2186641 47595104 ~ 47595686 (+) True G29421
TU36868 other downstream 2218833 47627296 ~ 47671421 (+) False AMCG00008232

Expression Profile