RNA id: AMCG00008201


Basic Information

Item Value
RNA id AMCG00008201
length 2211
RNA type mRNA
GC content 0.54
exon number 17
gene id AMCG00008201
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45421765 ~ 45435361 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATCTACCTAGTACCGAGTAATGCACATGCAGTTTAATTTGGACAAGGTGTGCGATCCCAGCTCTTTCCGCTCCGTGCCTTATGCAGTGCAATAACCAGAGGTCCACTCTGGGTAATCAAGTGTGCCTGGTGTCTTTCTGCAGGTTTGATCTCTCTGGTCTTGTTTGGCCTTGTGCTGGGCGCTCACAGCCTGACACCGTCTTATCACCTCTCCCCTACGGATGTGGCCAGACTGGAAGCCTTCTTGAACCAGCCCCTAACGGACCTGGAGTCGGCCTACTACTCCATCGTGGGGCTGAACAAGTTGGGAACCCGAGTGTCCGATGAGAAGCATGCTTGCCAGTTCCTGAAATCCCAGCTTGACCACAGCAGTATTGACTCACTGTTTTTTGCGGCGGAGGCCAGTCAGGCGCTCTCAGGCTGCGAGATCCCAGTGTCCAATGAGACCCGCGATATCCTCCTGGCGGCTGTGAGTGAGGACTCCACTGTGACGCAGATCCACCGCTCAGTGAGCGCACTGGCCTCTCTGGGCCTGCCCCTCGCTTCGCAGGAAGTTGTCAGTGCCCTGGCTACCCGCATCACCAAGGAGGATAATGTCCTGGCGATTACACTGGCGCTCCAGACGGCCTCTCGTCTCTCTCAGCAGGCCGAGCTGGGGGGCATCCTCGAGGAGATAGAGgATCTGGCAGCCAGGCTGGATGATTTGGGCGGGGTGTACCTGCAGTTTGAGGAGGGGCTGGAGGTCACAGCCCTGTTTGTGACCGCAGCCTATGCCCTCTCTGACCATGTGGGAATGGAGCCCCCCCTGAAAGAGGATCAGGTAATCCAGCTGGTGAACTCAGTCTTCAGTAAGAAGTCTTGGAGTTCTCTCGCGGAGGCCTTCAGTGTGGCCAGCGCTGCGGCTGCCTTCTCCAACAACCGCTTCCACATCCCCGTCATTGTCAGTGCCCAGGGCCCTGCCACCGTGTCCCACAGACAGCCAGTCCTGCAGCTCCTGGTCACCAATGTGCTGTCCCAGTCCCTGACCTCTGCCAGTGTCCAGGCAGAGTCCGCACGTGCCGTGTCCACCAAGAGTGTTGTCCTCAACCAGGCACCCTTCACACTCCGAGAGGAGAGCTTTGAGCTGAACTTCATGGACAGCCAACCAGCCAGCGGTTACTACGAGTTCACAGTCGCTGTGTCCGGGGACAGCCGCTTTGTCGCAAACCAGGTGGAGCTGAAGGTTAAAGTTTCTACTGAAGTGGGCATCACCAATATGGATCTGTCTGTCGTGGACAAGGACCAAAGCATCGGCCCAAAGACTACCAGGGTGGAGTATCCCAATAAGGCGAAGGGCAGCTTCACTGCAGACAGTCACCAGAACTTTGCGCTGTCCTTCCAGCTGGTGGATGTGAACACAGGAGTGGAGTTGACTCCGCACCAGACCTTCGTTCGGCTCCATAACCAGAAGACTGGTCAGGAGGTGGTGTTTGTTGCTGAACCGGACAGTAAGAACGTGTACAAGTTTGAGCTGGACACCGCAGAGAGGAAGTCTGAGTTTGATTCCATGTCTGGTACCTACGCACTGTACCTCATTGTGGGGGACGCAACTTTGGAGAACCCCATCCTCTGGAATGTGGCAAGTCCTCTTTTAATTCATGCAGCTGCTGATGTTTTGCTGAAGTTCCTGGATGAGGAAGCACCCTCTGTTATACAATCCAAAAACCTCTATGTTCCCAAGCCAGAGATCAAGCATTTGTTCCGGGAGCCTGAGAAGAAGCCACCGACGGTTGTGTCCAACACCTTCACAGCCCTGGTTCTCTCCCCCTTCCTGCTGCTCCTCATCCTGTGGTTCAAGCTCGGTGCCAACATTTCAAACTTCAGCTTCTCCCCCAGCTCCATCCTCTTTCACCTGGGCCATGCGGccATGCTGGGACTGATGTACGTGTACTGGACTCACCTCAACATGTTCCAGACCCTCAAGTATCTGGCCATCTTGGGCAGCCTTACGTTCTTGGCTGGAAACCGAATGTTAGCCCAGAAAGCAGTGAAGAGGATTGCTGCAGAGCAGAGTTGTAGATTGGCAAAGTATAGGAGCCTGCGGTAAAGAGGGCtttttacagaaacaaagtTGCAGTCTTCTGGGCTGAAaAGCGGAAATCCTTCATAATACAAAAGAGGTGGAAGATTTtgaagaatttttttttttttttataaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K12667 SWP1, RPN2; oligosaccharyltransferase complex subunit delta (ribophorin II)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36523 lncRNA downstream 1303 45419590 ~ 45420462 (-) True G29182
TU36509 lncRNA downstream 67679 45353807 ~ 45354086 (-) True G29170
TU36439 lncRNA downstream 270438 45149501 ~ 45151327 (-) False AMCG00008192
TU36401 lncRNA downstream 385352 45034445 ~ 45036413 (-) True G29081
TU36275 lncRNA downstream 733590 44682437 ~ 44688175 (-) True G28976
TU36533 lncRNA upstream 26418 45461779 ~ 45462530 (-) True G29192
TU36551 lncRNA upstream 54646 45490007 ~ 45490890 (-) True G29206
TU36650 lncRNA upstream 164198 45599559 ~ 45714037 (-) True G29249
TU36651 lncRNA upstream 233540 45668901 ~ 45714037 (-) False G29249
TU36654 lncRNA upstream 250877 45686238 ~ 45714037 (-) False G29249
AMCG00008202 mRNA downstream 6952 45409263 ~ 45414813 (-) True AMCG00008202
AMCG00008195 mRNA downstream 71678 45344179 ~ 45350087 (-) True AMCG00008195
AMCG00008197 mRNA downstream 81884 45337454 ~ 45339881 (-) True AMCG00008197
AMCG00008196 mRNA downstream 118799 45295300 ~ 45302966 (-) True AMCG00008196
AMCG00008189 mRNA downstream 141411 45272415 ~ 45280354 (-) True AMCG00008189
AMCG00008203 mRNA upstream 31822 45467183 ~ 45484122 (-) True AMCG00008203
AMCG00008209 mRNA upstream 62745 45498106 ~ 45503562 (-) True AMCG00008209
AMCG00008206 mRNA upstream 68681 45504042 ~ 45518710 (-) True AMCG00008206
AMCG00008208 mRNA upstream 89866 45525227 ~ 45537055 (-) True AMCG00008208
AMCG00008207 mRNA upstream 104396 45539757 ~ 45546688 (-) True AMCG00008207
TU36269 other downstream 1003569 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2657111 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3571875 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4219940 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4404517 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 615334 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 1045585 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 2278573 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2688564 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2845981 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000058_00252333_00267027.mRNA True 1786 mRNA 0.48 14 CI01000058 252283 ~ 267027 (-)