RNA id: AMCG00008202


Basic Information

Item Value
RNA id AMCG00008202
length 1761
RNA type mRNA
GC content 0.58
exon number 13
gene id AMCG00008202
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45409263 ~ 45414813 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atGCACGGTTTGAGAGCTTTGCTACACAGAGCGCAGTTGCAGCGCGGAGGGGCCCCAGGGCGCAGCTATTGCTCAGGGACCCTAAAGACGATCACTGGACAGAAGCAGCCCAGCAACAGTGCCGATGCATGGAGAAAAAAACTTGCATCAGGACCAGGGTTTCAAGATTTCATTGAACATGCTTCTCCCAAAGACAACAAGTCCCGGCTGCACCAAGTGGTTCTGGAGGAGATGCATCCCTATCTGCCTGAGGACCCACAGATGGGGAAAGGGAGAAAAGTGTACTTCGAAACGTACGGATGCCAGATGAATGTGAACGACACGGAGATCGCCTGGTCTGTCCTGCAGAAGAAGGGATACCTCCGCACAACTGAACTCACTCAGGCTGATGTGGTTCTTGTTGTTACATGCTCCATAAGGGAGAAAGCAGAGCAGACTATCTGGAACAGACTGCGACAGCTCACTGCCCTCAAACAGAGGCGCCCCAAGTCACACGCTCCACTCAAAATAGGAGTTTTAGGGTGCATGGCAGAGAGGCTGAAGACGGAGCTGCTGGAGCGAGAGAAGCTGGTGGATGTTCTGGCCGGGCCTGACGCCTACCGGGACCTCCCCCGCCTGCTGACAGCCGCCCATAGCGGGCAGAGGGCCAGCAACGTGCTCCTGTCACTGGAGGAGACCTACGCTGACATCATGCCTTTGTATGTGTTGTTTGTCAGCTCCATCATGCGTGGCTGTGATAACATGTGCAGCTACTGCATTGTCCCGTTCACCCGTGGCCGGGAGAGGAGCCGCCCGTCTGCATCCATTCTGGAGGAGGTCCGGATGCTCTCGGACCAGgGAGTGAAGGAGGTGACTCTGCTGGGGCAGAATGTGAACAGCTACAGAGACACCTCAGAGCAGCAGTTTTCTGGCACTCAGCCCACACAGCTGAGCCGCGGCTTCAGCACGCTGTACCGGGGTCGGCCGGGGGGGCTGCGCTTCACTGAGCTGCTGGACAGAGTGTCCCTCCTCGACCCTGAAATGAGGGTCCGCTTCACCTCTCCTCACCCGAAGGACTTCCCCGACGAGGTtctccagctcatccaggagAGGAGCAACATCTGCAAGCAGATCCATCTGCCAGCCCAGAGTGGCAGCAGCAGAGTCCTGCAGGCCATGAGGCGAGGCTACACTAGAGAGGCATACTTAGAGCTGGTGGCACACATACGGAAAATAATACCAGGGGTCAGCCTGAGCAGTGACTTCATTGCCGGCTTCTGCGGAGAGACGGAAGAAGACCACCAGCAGACCGTCTCCCTCCTTGGAGAGGTGCAGTACAACGTGGGCTTCCTCTTTGCATACAGCATGAGAAAGAAGACCCACGCCTTCCATCGCCTCCAAGATGATGTCCCGGCAGAGGTGAAACAGCGCCGCCTAGAGGAGCTCATCGCTGTGTTCAGGGAAGGGGCTCTCCGAGTGAACAGTGGTCTCATTGGGAGCACACAGCTCGTCTTAGTGGAAGGGGAGAGTAAGAGGTCGGCGGCAGACCTGTGTGGGCGGAACGACGGCAACGTGAAGGTGATATTCCCCCGGCAGGATATCCCATCAGCCCCCTGCTCCCCGAGCACAACAGCCATCCGTGCGGGAGAATACGTGCTGGTTGAGATCACGGCCGCGAGTTCCCAGAGCCTGAGAGGTGTCCCGCTTTGCCACGCGACAGTGAGCTCAGCGGGGAACACGCTGCCTCAGACCtgtgaagagggagagacagccGTGTGCTGA

Function

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36509 lncRNA downstream 55177 45353807 ~ 45354086 (-) True G29170
TU36439 lncRNA downstream 257936 45149501 ~ 45151327 (-) False AMCG00008192
TU36401 lncRNA downstream 372850 45034445 ~ 45036413 (-) True G29081
TU36275 lncRNA downstream 721088 44682437 ~ 44688175 (-) True G28976
TU36278 lncRNA downstream 727494 44681425 ~ 44681769 (-) True G28978
TU36523 lncRNA upstream 4777 45419590 ~ 45420462 (-) True G29182
TU36533 lncRNA upstream 46966 45461779 ~ 45462530 (-) True G29192
TU36551 lncRNA upstream 75194 45490007 ~ 45490890 (-) True G29206
TU36650 lncRNA upstream 184746 45599559 ~ 45714037 (-) True G29249
TU36651 lncRNA upstream 254088 45668901 ~ 45714037 (-) False G29249
AMCG00008195 mRNA downstream 59176 45344179 ~ 45350087 (-) True AMCG00008195
AMCG00008197 mRNA downstream 69382 45337454 ~ 45339881 (-) True AMCG00008197
AMCG00008196 mRNA downstream 106297 45295300 ~ 45302966 (-) True AMCG00008196
AMCG00008189 mRNA downstream 128909 45272415 ~ 45280354 (-) True AMCG00008189
AMCG00008190 mRNA downstream 169848 45235059 ~ 45239415 (-) True AMCG00008190
AMCG00008201 mRNA upstream 6952 45421765 ~ 45435361 (-) True AMCG00008201
AMCG00008203 mRNA upstream 52370 45467183 ~ 45484122 (-) True AMCG00008203
AMCG00008209 mRNA upstream 83293 45498106 ~ 45503562 (-) True AMCG00008209
AMCG00008206 mRNA upstream 89229 45504042 ~ 45518710 (-) True AMCG00008206
AMCG00008208 mRNA upstream 110414 45525227 ~ 45537055 (-) True AMCG00008208
TU36269 other downstream 991067 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2644609 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3559373 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4207438 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4392015 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 635882 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 1066133 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 2299121 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2709112 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2866529 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006580 False 2122 mRNA 0.41 13 NC_007122.7 15480695 ~ 15587134 (+)
grasscarp (Ctenopharyngodon idella) CI01000058_00155300_00224503.mRNA True 1650 mRNA 0.46 11 CI01000058 155300 ~ 224503 (-)