RNA id: AMCG00008203


Basic Information

Item Value
RNA id AMCG00008203
length 4925
RNA type mRNA
GC content 0.56
exon number 16
gene id AMCG00008203
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45467183 ~ 45484122 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAACCTGCGCGAGACGCTGGGCGCGAGATAGAAACTACCGCGCGGGCAGTGCGTGTTGCCTCCAAAACCCGCACCGTTTCGCACCGAAAACCAGTCCAAATTAAAAAACCCTCATCCATGCGTCcgtagtggtggtggtgttggggGGGCGGATTGCCGTGAAATCACGCTGTTGCGGGCTGCCGAGAGCGGCGCGGAGACATGTCCTGGTGGGCGCGCGGGGAAGATGGTGAGGACACGGTGTATCAGGACACAGACTCGGATGTGGCAGAGCAGCGGGAAAGTGGAAAGGTCAAGGTGAAGTGGACAACAGAAGAGAGCCGCACTGAGCATCAGTGCCAGCACAGGTGGTTTAAGGTGCTGAACCCAGACCTGATCAAAGGTCCTTGGACAAAGGAGGAGGACGAGAAGGTCATTGAACTGGTGAAGAAGTATGGCACCAAGCAGTGGGCCATGGTGGCTAAGCACCTGAAGGGGCGCCTGGGCAAGCAGTGCCGGGAGCGTTGGCACAACCACCTCAACCCCGAGGTCAAGAAGTCCTCCTGGACAGCAGAGGAGGACCGTATCATCTACCAGGCCCACCGTGTCCTGGGCAACCGCTGGGCTGAGATCGCCAAGCTGCTGCCTGGCAGGACGGACAATGCCGTGAAGAACCACTGGAACTCCACCATCAAGCGCAAAGTGGAGATGGGTTTCTATGCTGGAGAGGAAGACAAGCCCCTGAAAGCAGTTCCCCCGCTGGAGCATGGAGAGGTCATGGAATACTACAAAGAGGACAAGCAGGCCGGGTTCCAGTGTGACGTGGTGCTGGAAACTGACCCAGAGCCCTCGGCTGCAGAACAGgcCTCCCCTCCCACCTCGGCCCCAGATCCAAAAGGCTCAGCCTCGGGGGAAGCGCTTTCCCCAAAGTCCCCGCCCCTCCCCCAGCTCCCCGGGGGGCTGACCCCTAAAAGTGAACCGGACACCTCGGGAGAGCCCTGTCCCAGTCGCTGGGTGGTGGACAGTGCTGGCTTCCTATCGCCCACGCCTGGCCCCGCCTTCAAGGAGGCGTTGGAGCTGATTGAGGGGTCTTCTCCTCGCCCCAAGCCGGCCAGAAAAAAGGGGAGCAGTGGTGATTCGAATCTCCCGGATTCGCTGAAGCCCTTTTTTAGAGACTTGCGGCATCACGAGGGAGGCATTACCACAATGACTTGCAAGCTCTGTCGTTTCCAAGTCCACTCCAAGCCAGGCACCACTTCCAACTTCCTCCGGCACATCAAGCGCACCGTCGGGCTCAGGCTGTACGATGAGGTGGAGAAGGCCGTCAAGCCTACTTTGATCCGGGAGCTGAAGAGCTGTATAGCCACGGGAGGGGGCGACGCCATCATTCATGCCACCCTGGACCTGTGGGCCAGCCGCTATGGGGAACCTATCATTGGCGTCCAGCTGCACTTTTTCGACGAGCAGTGGAACATCCATCGGCCCACCGTCGCCTTCCGTCACCTGAACCACAAGAACCTCGTGGCTGTGGTGGCCCGGGAGCTAGAGGCCGTGCTGCTCAGCTATGGCCTCTTCCCCCACAACATTGGATACATAATCACTGGGGAGGCTAAGAACATAATCTCCAGCTACGACCTGTTCTGTGACTACAGGGTGATGTGCTCCACCCAGAAGAATGACCCGGATGAGGAAGATGTCCTCGGTTTCCTGGCTGACTGCTACCCCATCGAGGAAACTGAGTTCTCGGAGATCCAGTTCGGGACGCGGGTGAACTGCATCGCACACCTCCTGCAGCTGGTTATCAAGGAGGCTTTGAAAACCTCACGGGTGGTGGAGAACCTGCTCTCCCAGGTCCACAATGTGGTGGCTTTCTTCCGTCGCAGTGCCTACTGGACTGAAGTGCTGGTGAAGGAGTGTGGCCTGTCTCTGGCCCCTCCACTCTCCGCCAGCAACTACCGCTGGAACTCCACCTTCACGTCCGTCCGCAAGATGGTGCAGGAGGCGGTATGGGGCTCTGTCATGACCCTGTTGGCCCAGGCTCGCATCGAGGCCAAGGACTCGTCCAGCTCCCCACCACAGGTGAGGGCCAAGCGGGAGCAGGTTCTGGACATCATTGGGCTGCTAGAGCCCTTTGAGGAGGCCACCCAGGTGCTGCAGGGTGAGGGCATCACCTTCTCTCTCATCATCCCCTCCATCATTGGCCTGGACAAGACTCTTGAGACCAGGTCAACAAACTACGCTCACTTCTGTAAGGCCCTGCGCAGCGGCCTGCATGCCAGGTTCCAGCCGCTCATCCTGCAGAGGGACCTGATTCTAGCCACTGTGCTGGACCCCAGGATCAAGCTGCAGCCCTTCTCAGACACCAAGCTTGAAGTGGAGAGTGGTTTGCTCAATGCCCCTTGCAAATTCCAAGCCAAGACGGTGGTGGAGTCAGCCATGGGTGACCTGGGTATCTGGAACGCCCAGGAAGAAGGGGGCCTGAAGCAGGAGGACAGTCAGGAAGATGTTAATGATGACACAGACGCCTCCAGCCCCATGAGCAGCAACCTCAAGCGCAAGAAGATCTTCAGCTTCTTCCAGCCACCCACTAAAACCATGAAGTTTTCAGAGCTGGATCTCTACCTGTCCGAGACTCTGCTGGACGGAGACGCCTCTCCCCAAATCTTCTGGAGGGAAGCCAGCCGTTTCCCTCAGCTGCAAAATCTGTCCAGGAAGCTCTTGGCTGTGCCTGCCACCTCCGGGGGCTTTGACCGCCTCTTCCCCCTGGCTGGATGCATTGATCTGGATGGCTGGTGTGACCTGACCACCTTTGACCTCCCCGAGGACAGCCAGGGCTCGGAGCTGCTGCAGTTCAGGCTGGAAGGGAGCACGCTGCAGGAGCTGAGCCGGGGGAGCCGGGGAGAGCTCATCCCCATCTCGCCAGGCGGGGCCACCCCCCCCTCCATTCTGACCCGTCGCAGCCGCCGGCGCCTCGCTCAGTCCCCGGGTAGCAGCCTCATCGAGCTCAATGACACCATGACCCCCAAGAGCACCCCTGTCAAGATCCTGCCCTTCTCCCCCTCTCAGTTCCTGAACATGTGGACCAAGCAGGACAGTCTGGACCTGGAGAACCCCTCTCTCACCTCCACCCCCGTCTGCAGCCAGAAGGCCATCGTTACCACACCCCTGCACCGGGACAAGACCCCCCTGACCCAGAAGGAGAACTCTGTGTTCATCACGCCCAACCACAAGTCTGACCTGAACACCACCCCCCGGACCCCAACACCCTTTAAAAATGCCATGGAGAAGTACGGCTCTCTGCAGCCAATGcCTCCAACCCCCAACCTAGAAGAGGACCTGAAGGAGGTGCTGCGCAGTGAGGCTGGGCTTGAGCTCATTGTGGAAGACGAGACTCCGCAGGAACAGAGACGCAAGCAGCACCATCGGCCGCCCATGAAGAAAGTGCGGAAGTCCCTGGCTCTGGATGCCATGGATATCAAAGAGAGCCTCCCAGTGAGACTGCAGGCCTCCAGACCCCCCTCGGCACAAAGCCCCAAGGAGGAGAGCGCTCTATCAGTTTCCCTGAACTCCTCATCCCTCTCCATGAAGAAGGAGGAGAACGTCTTGGACCAGGGCTTCATCCTGGCCCCCTGTGACAGGACCCCCGACCCCAGTGCTGCTCCCCCCACACCGATGTCCCAGGCCTGGGAGGCGGTGGTGTGCGGCCGGACAAAGGACCAGCTCATCATGACGGAGAAGGCCAGGCGGTACCTGCGCTCGCTGAACCCCAACCCCACCAACCGAGCCCTCATCCTGTCCTGAGCCCCAGCGCCCAGCAGCCCAGCCTGCCCCACATGCTGCCCCAGCCCTGCGCCCGACAGCACAACACACCCTGGCCCTCCGGCCTTGGGGTGCGCTGTACTTCTAGACCAAGAAAGAGTGTGATTTTAGCTGTTCAGAAAATCACAAACGTATGCACCCTTCATGCCCCAGTGCTCAGACAGCTGATGAGCCAATCTGCAGTGTCAAGATGTAAAATATTCATGACAAAACTTTTATCATAAATCACTTTTCTCACAACTTaatatcaatttttatttatttttatttctcatgtGACTCTTTAATAAAAGTATAACTAGATAATATGAAGCTTTTCCTGGAATAGAGGAGCAATCTATTTGTCTAGTCAAACAAAACTTTTCCAGAACTAAAACGCTCTTTCTACATGTGGCCACTTTAGTGCTTTTCCCATTGATTTATCACGTTTAGAGCATGATTCTGTCTTATCAGTGTAGATTACACCACCTCAACAGGATTTACTGTTTGTAATTCattccataatttatttattgaaaaggCTTAACTAAGCTTTAGAGAGGCTCAGCATTAACTATATAAacttgcatttattaattttgtttcttagGTTTAAAGTTAGCCTTTGgcttgttttgtatatattatttttctccacagTGTTGCTGCATTCCAGACTGTAGACCTGCCTGAGTGGTTATATAGGTTTAAGAAAGCAGGTAGTGGAGTTGGTTCAGTTTAAATAGCTACTTAGAGGTGAATTGAATTTGCTACAAGTTAGCAGGAAATGTTAGGTACAAGATACCCCACCTCCATCTCTACCTCTTTCCAAAAGACAGGCCAGGCTATCAGTGATGTTTACATTCTTAGAGGaggaaaacataattgaaaagaaaaatacaaacctaGGTCTTTATCTGAGTAGGTATCTGACTGCACTTCTCTACAGAGTTGTCCATGTCCATGTGTCCTATACAGGCAGCTGTATGGTGtggagggagaggcagggagtgAGCGATGTGTGACTCTGCTGTACGGCTCTGTATCTCCTGCTGCAGCCCAGGCCTCCCTGCTGGGAGACCTGCTGCTGTGAAGGGGCTGCTTAGGATATGTACAGCAATCCTGATGCAGGGATCCACAATACCAG

Function

GO: NA

KEGG:

id description
K21769 MYBL2, B-MYB; myb-related protein B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36533 lncRNA downstream 4653 45461779 ~ 45462530 (-) True G29192
TU36523 lncRNA downstream 46721 45419590 ~ 45420462 (-) True G29182
TU36509 lncRNA downstream 113097 45353807 ~ 45354086 (-) True G29170
TU36439 lncRNA downstream 315856 45149501 ~ 45151327 (-) False AMCG00008192
TU36401 lncRNA downstream 430770 45034445 ~ 45036413 (-) True G29081
TU36551 lncRNA upstream 5885 45490007 ~ 45490890 (-) True G29206
TU36650 lncRNA upstream 115437 45599559 ~ 45714037 (-) True G29249
TU36651 lncRNA upstream 184779 45668901 ~ 45714037 (-) False G29249
TU36654 lncRNA upstream 202116 45686238 ~ 45714037 (-) False G29249
TU36696 lncRNA upstream 309556 45793678 ~ 45793951 (-) True G29284
AMCG00008201 mRNA downstream 31822 45421765 ~ 45435361 (-) True AMCG00008201
AMCG00008202 mRNA downstream 52370 45409263 ~ 45414813 (-) True AMCG00008202
AMCG00008195 mRNA downstream 117096 45344179 ~ 45350087 (-) True AMCG00008195
AMCG00008197 mRNA downstream 127302 45337454 ~ 45339881 (-) True AMCG00008197
AMCG00008196 mRNA downstream 164217 45295300 ~ 45302966 (-) True AMCG00008196
AMCG00008209 mRNA upstream 13984 45498106 ~ 45503562 (-) True AMCG00008209
AMCG00008206 mRNA upstream 19920 45504042 ~ 45518710 (-) True AMCG00008206
AMCG00008208 mRNA upstream 41105 45525227 ~ 45537055 (-) True AMCG00008208
AMCG00008207 mRNA upstream 55635 45539757 ~ 45546688 (-) True AMCG00008207
AMCG00008217 mRNA upstream 156164 45640286 ~ 45641803 (-) True AMCG00008217
TU36269 other downstream 1048987 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2702529 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3617293 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4265358 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4449935 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 566573 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 996824 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 2229812 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2639803 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2797220 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile