RNA id: AMCG00008206


Basic Information

Item Value
RNA id AMCG00008206
length 2550
RNA type mRNA
GC content 0.41
exon number 9
gene id AMCG00008206
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45504042 ~ 45518710 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGAAAACCAGCAGAGATGTGGggctccaggactggtttgggaaTCTAAACGACCCATCACTGCTCTGATACGCCTGGTAACGATACCGTTTCTtggaaaactttatttttcttttatttgtgtaaaaagTACAAATCGGACGAAATGCATCGGAGTGCGTGCTTCACTTGCATCCTGAAGGTGGCGGACATATTTCAAGACTTCATACAGAAAAGAAGAGCAGCACTTCAAGAGTTTGTCCAGAAGTCAAAAGAGACGTTATGCAAATACTCTGAAGCGATTTCTCTTTTGGAGATGGATCGAACAAAACCTATGGCTAGCAGTAATCAACTTCGGCTGCCCTCCACCTGTGATGTGAACCTGGGACCTTCGGCTAATCCTCATGCCAGACCTACAGACTTTGATTTTCTGGCAGTGATTGGAAAAGGAACCTTTGGGAAGGTGCTCCTGGCCAAACGAAAGTCAGACAACAAGTTTTATGCTGTGAAGGTTCTGCAGAAGAAAGTTATCCTGAAGAAGAAAGAGGTTGGAGATCTCAAGCCAGAAAATATCCTGTTAGACTCTCAGCTGGAGATTAAAAACCATGTGTTTTTCTCACCTTTAAACTGGGATGACCTTTACCATAAGAGAATCAACCCTCCATACAACCCCAATGTGAATGGCCCAGCTGACCTGCGACACATTGACCCAGAGTTCACCAAAGAGATGGTCCCCAATTCTGTGGGCCGCACGCCTGAACTCAACTCCTGCCTGGGAACCAGCAGCTCCAATGCCTTTAAGGGCTTCTCCTATGTGTCCAATGATGATGCTTTTCTTAACTAAGAGTAACCGTGTGAGCCCTGCTCTACCTCCCCTCTGACCACTGCCAGAGACCAGACTGAACTTCCAGAAACCCAAGGCAGATCAACCACACTTTTTGTTCTTCACAAAAACTCGAAATCCAAGGTCACCTATGATGACTTGAGTTGACCAAGATCCCAGCATTCAGGGTTGAATCGAATGACCTGTTCGCTTTCCCCTTTTCAGTGTTGCTTCATGCTTCACTTAATAATAGGAGATGGAAAGGATCCAGCATGGGTGTCTGCCCACCCTACTTGTGGGTCTATAGCAAATTCTATGTGTACATAATTAAAACTGCAATATTTCAGGCTTATtgataacttatttaattttttccccctcttggCCTTGTTTGGATTTATAACAGGATGAAATTTAACTCCAACCGGCCACAGTGTAGATCCTAAATGGCcaccttttaattatttctgtccTGTCACAAACTCGGATCATGTAGATAAAACAATTACCATAACAATTCTAGACAATCTGCAAAAGTTGCATCAGACTATAATTGCATACAAATCGAATTATCTAGTCTGGGAGGGCTGCTCATTTGAGTTGGGTGTGGAAGTGTTGAGTGCATTGTGCTCACACGAAAACCTCAGGGATTCCTTTGTTAGTGGATTTGAATGACTTTCCTTTTCAGTTCTTCACAAAGTCTCCATTGAACACAAGGCCTTTCTGATTTAGTTGAATGGAGACCCCAGTGCACTGCACTGAGCACTGCATGAGACCCCTTTTGAATAATGTACCAgtgagttttgtttgttgttttgttgggtTTTGAACTGTTTGTAATACACTGGATATCTAATAGGCCTATATGAAGAGTGTGGGTGTTGTAAAAAATGATCTTGCTCCCTGGTAGTCTTATGAGAGTCCCATTATTAATTAAGAGCAAAGTCCTTGTCTCCAGAGAACTTATCTTTGTTGTTGTGAATGCCAAATTCATAACAACAATGTAACATGGGTTTGTCTCTCCCTGTAAAGCCTTTGCCCTTTCTACCCAAAGCATAGATCTTATCAAAATAAagactgtactgtatattactcCTGCACATACACCTTTGATTCCATGTGGCCTGGGTATCTATATATCAGCCCTTCTAAAAATGATACAGCTGGTGACTTTGTTTTGCATATAATGATGTTTAACTGATCCAGATGTTAAAATCTAATGTGCAATTGTGATTACAAACACTTTTCTTGATCTTAAATTTCATTAATCGATCGGGTCTTTACTGGTGCATTCCCTGGGCATGTTTTAGCTGTTGAAGATTTACTGATTTAAATGGTGTTTTTttgaatctttatttttttagctttgCATCAAATACATGTCTGACTGAGGGAATTAATGCACTTCATGGTGCTAAAGTTTGCCACAAGTTCAAGCTTTGTTAGAAAGCCCTGGATAGACTATTTCCTTATTACATCTGTTTTCATGGGGCACCCTTGGGCCAGACACTAGTCGTGCGCAGGTTAGCCTTTTGTGTCGAAAccctattttaaatatttgtattattcaccCAGGTATAAATACTCTTAGTTTTCCTTctgtatgtttagttttttcttgctGTAAATCGCTTTCCTATAGCTACAATAGGCCGATTTATATCATtggaatattttgtattttggtgATGGGGTGGGGTAGGtctgtatgcaaatgtattgtaaacacatgtatttactgtgcaatc

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36551 lncRNA downstream 13152 45490007 ~ 45490890 (-) True G29206
TU36533 lncRNA downstream 41512 45461779 ~ 45462530 (-) True G29192
TU36523 lncRNA downstream 83580 45419590 ~ 45420462 (-) True G29182
TU36509 lncRNA downstream 149956 45353807 ~ 45354086 (-) True G29170
TU36439 lncRNA downstream 352715 45149501 ~ 45151327 (-) False AMCG00008192
TU36650 lncRNA upstream 80849 45599559 ~ 45714037 (-) True G29249
TU36651 lncRNA upstream 150191 45668901 ~ 45714037 (-) False G29249
TU36654 lncRNA upstream 167528 45686238 ~ 45714037 (-) False G29249
TU36696 lncRNA upstream 274968 45793678 ~ 45793951 (-) True G29284
TU36706 lncRNA upstream 460550 45979260 ~ 45979468 (-) True G29294
AMCG00008209 mRNA downstream 480 45498106 ~ 45503562 (-) True AMCG00008209
AMCG00008203 mRNA downstream 19920 45467183 ~ 45484122 (-) True AMCG00008203
AMCG00008201 mRNA downstream 68681 45421765 ~ 45435361 (-) True AMCG00008201
AMCG00008202 mRNA downstream 89229 45409263 ~ 45414813 (-) True AMCG00008202
AMCG00008195 mRNA downstream 153955 45344179 ~ 45350087 (-) True AMCG00008195
AMCG00008208 mRNA upstream 6517 45525227 ~ 45537055 (-) True AMCG00008208
AMCG00008207 mRNA upstream 21047 45539757 ~ 45546688 (-) True AMCG00008207
AMCG00008217 mRNA upstream 121576 45640286 ~ 45641803 (-) True AMCG00008217
AMCG00008215 mRNA upstream 126538 45645248 ~ 45662347 (-) True AMCG00008215
AMCG00008213 mRNA upstream 198682 45717392 ~ 45724427 (-) True AMCG00008213
TU36269 other downstream 1085846 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2739388 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3654152 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4302217 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4486794 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 531985 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 962236 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 2195224 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2605215 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2762632 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile