RNA id: AMCG00008208


Basic Information

Item Value
RNA id AMCG00008208
length 2484
RNA type mRNA
GC content 0.58
exon number 20
gene id AMCG00008208
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45525227 ~ 45537055 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTGGGAAAGTGGGCCTGGAGGTGCTGGTGGTGGGCGGAGAAAGCCCCTGCCCTGACACCAATGCCCCCCTCCCACCCAATGAGAGCTCAGCGCAGAAAACACGCCCCCAGACAACTGCCTTCATTCTGCCAGCCACCAGCTCCACGCTCAGCCTGGCTGTCTGCAAGGGGGAGGGGCCCAGGGGCACCATGGAAACCCTGAAGGGGGGCGGGGCCGGCGAGCTGCTGACCCCCCAGGTGGGCGGGACCTGCAGCGTGGGCTATGTGCTGGAGTGGAAGGAGGGCGTGCCTGTGCTCCCAGGAAGCAACTTCAAGTTCCGGATGAGCGAATTTGGAACTCTGGCGGTCGTCAGCGACAGGAAGGTTCCCCTTGTGGAGCCCAGTCCAGAGGTCGCTGCTGGGAAGGAGGTGGAGATGGACAGGAAGCCTGGCCACAAACCTGTTTTACACCATTCTGGTGATGGCATCTCCCTCAATCCTGTGACTGGCTGTGCAGGGGAACTGGAGCGAACAATTAAAGAGGAGCAACAGTCAGAGGAGGATTCTGGGCGGTGTGAGGGTTTCAGCCCCGTGGCAAACAGGGGCTACCTTGAGGAGCTGCGCAGAGAGCCTATCACAGACAAGCCTCCTGGAATGGAGAAAACCTCAGGGTCACAGGTGTCTGTGTTGAACCCTGAGCTTCTCAAACCcatgaagaagaggaagaggaaggactACCTGAGCCCATCGGAGGAAGAATCAGAGATGGAGGCCATGGTAGGGATGATAGAAGAAATAATGCATAGTGATATACGCTGGCATTATTCTCACAAGGGATATACTCTGTGTGCAGTTCCAGCCGAGGGGAAGAAGGAGTCGTGGTCGTGGTCATGGCCGCAGTATCTGGAGGAGCAGAAGGCCGTCGCTGCTTCGCCCAAGCTATTCCAGGAGTTCCAGAGGGTCCCTCAGTGTAAACACAGCTTCCGCATGGGCATGAAGCTGGAGGGCATCGACCCCCAGCATCCTTCTATGTACTTCGTCCTCACGGTTGCTGAGGTGTGTGGCTACCGGATGCGCCTGCACTTTGACGGCTACTCGGAGTGCCACGATTTCTGGGTCAACAGCAACTGCCCAGACATTCACCCTGCTGGCTGGTGTGAGAGCACTGGCCATAAGCTCTATACCCCCAAAGGGTGTAAAGAGGAGGAATTCTCCTGGTCCAGTTACTTAAGGCTGACTAAGGCACAAGTGGCCCCCAGAGAGCTCTTTGTCAGTCCTGGGAGAACGGATGTCTCGTGTGGTTTCGAGGTGGGGATGAAGCTGGAGGCTGTCGACCGCATGAACCCTTCCCTCATCTGTGTCGCCACGGTCACAGATGTGGTGGACAACCGCTTCCTGGTTCACTTTGACAACTGGGATGACACCTATGACTATTGGTGTGATGCAAGCAGCCCATACATCCATCCCATTGGCTGGTGCCAGGAAAGAGGCCTTCCGCTCACTCCTCCACAAGATTATCCGGATCCAGACAATTTCTCCTGGGAGAAGTACCTGAAGGAGACAGGCTCCACCGCCGTGCCAGCCCAGGCCTTCAAACTGCGCCCCCCCCACGGGTTCCAGGTGGGAATGAAGCTGGAGGCTGTGGACAAGCGCAACGCTGCCCTCATGCGCGTGGCAACTGTGGAGGACATCGACCCGCACAGAGTCAAGATCCACTTTGATGGCTGGAACCACATGTATGACGAGTGGATGGACGCAGACCACCCCGACCTCCACCCTGCAGGCTGGTGCGAGGGCACTGGGCATCCCCTGAAACCACCTCTCCGACCCCGGGAGTCCTCGGGACAGGCGGCCTATGCGTCCCTGTCCTGTAAGGGGATGACCCATTCCAGATCCAGCAAGTACAGCTTCCACCACAGAAAGTGTCCGACCCCTGGCTGCGACGGCTCTGGTCATGTGACCGGACGCTTCACTGCCCATCACTGCCTGTCGGGCTGCCCACTGGCCGAGCGCAACCAGGGCCGCCTGAAGACCGAGCTGTCTGACACAGAGGGACCCGGGGCCAAGCGGAACCTGCTTGTGTTTGGCCAACGCGCCAAGAAGTCCCGGCACCATGGCAGGAAGAGTCAGCAGAGGGCGTACCAGAGTATGTCAGCAGAAGGCGTGCATCCCTCCCTCTTCATGTCTGCCCTCTCAGCCCACCCTGACCGAGCCCTGTCCCTCTGCTGGGAGCAACACTGCAAACTGCTGCCTGGGGTGGCTGGCATCCATGCAAGCAAGGTGGCCACATGGACTGTGGAGGAGGTGTTCAATTTCGTCCAGAACCTGACTGGCTGTGAAGAGCAAGCCCGACTCTTCAGAGAGGAGATGATTGACGGCGAGGCTTTCCTCCTGCTGACCCAGACAGACATTGTGAAGATTATGAGCATCAAGCTGGGCCCGGCTCTCAAGATCTACAACGCCATCCTCATGTTTAAGAGCACAGACGACGGACTCAAGTGA

Function

GO: NA

KEGG:

id description
K24387 L3MBTL; lethal(3)malignant brain tumor-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36551 lncRNA downstream 34337 45490007 ~ 45490890 (-) True G29206
TU36533 lncRNA downstream 62697 45461779 ~ 45462530 (-) True G29192
TU36523 lncRNA downstream 104765 45419590 ~ 45420462 (-) True G29182
TU36509 lncRNA downstream 171141 45353807 ~ 45354086 (-) True G29170
TU36439 lncRNA downstream 373900 45149501 ~ 45151327 (-) False AMCG00008192
TU36650 lncRNA upstream 62504 45599559 ~ 45714037 (-) True G29249
TU36651 lncRNA upstream 131846 45668901 ~ 45714037 (-) False G29249
TU36654 lncRNA upstream 149183 45686238 ~ 45714037 (-) False G29249
TU36696 lncRNA upstream 256623 45793678 ~ 45793951 (-) True G29284
TU36706 lncRNA upstream 442205 45979260 ~ 45979468 (-) True G29294
AMCG00008206 mRNA downstream 6517 45504042 ~ 45518710 (-) True AMCG00008206
AMCG00008209 mRNA downstream 21665 45498106 ~ 45503562 (-) True AMCG00008209
AMCG00008203 mRNA downstream 41105 45467183 ~ 45484122 (-) True AMCG00008203
AMCG00008201 mRNA downstream 89866 45421765 ~ 45435361 (-) True AMCG00008201
AMCG00008202 mRNA downstream 110414 45409263 ~ 45414813 (-) True AMCG00008202
AMCG00008207 mRNA upstream 2702 45539757 ~ 45546688 (-) True AMCG00008207
AMCG00008217 mRNA upstream 103231 45640286 ~ 45641803 (-) True AMCG00008217
AMCG00008215 mRNA upstream 108193 45645248 ~ 45662347 (-) True AMCG00008215
AMCG00008213 mRNA upstream 180337 45717392 ~ 45724427 (-) True AMCG00008213
AMCG00008214 mRNA upstream 200433 45737488 ~ 45760782 (-) True AMCG00008214
TU36269 other downstream 1107031 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2760573 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3675337 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4323402 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4507979 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 513640 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 943891 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 2176879 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2586870 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2744287 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile