RNA id: AMCG00008213


Basic Information

Item Value
RNA id AMCG00008213
length 1727
RNA type mRNA
GC content 0.62
exon number 3
gene id AMCG00008213
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45717392 ~ 45724427 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTACTTCGGAATGAGGTGCTACTGCGCCTGTCACTCACTCCGTGACACCTCGCAAGGGCTCCGGCGTGTGCGAGCGCCGATTGGCTGCGACGGCCTCGGGGGGAGGGACTTTCCCAGTTTCGGCTGTCAGATTGGCAAGGCGAGGAGGGACTTGCCGCCGCGGCTCGCAGGTAGACGGGATAAAGCGACAGGACGACTGACACAGGCGATCAGGCGGAAAATGCTCGTGAAAGCCCCGAGTGCGCCGTAAAAACGACACGGAGCGGGCGGCAGGGTCGGAGCTGCGGGGACGGCGAGAGCATTTGCGGCGGCTGTGCGACGCCAGCGCTCCGGGTGCTGGAAACTCCCGTGCGTGGGGCTGCGGAGGGGCACGCATTTTGCACGGAACTTCAAAGAGCGCTGCCTGCACGCCAACGAACCCCCAACCATCACAAAGAATGAAAGCTTTCAAGAGAGTTCTAGAGGAGGAGCCGGCAGTGGAGCCTGAGTTTTCCATGATGTCAGACAGCGACCCGTGTGAGGATGATGGGGGTGGCGGGTTCCCCTTGGACCTGTCTGGAGGCTCCAGAAAGAGACGCCGTCGTGGAAACCTCCCTAAAGAAGCTGTGCAGGTGCTGAGAAGCTGGCTGTACGAGCATCGCTTCAACGCCTACCCATCGGAGCAGGAAAAACTCAGTCTGTCGGGTCAGACCAGCCTCTCTGTGTTACAGATCTGTAACTGGTTCATCAACGCTCGAAGGCGGCTGCTCCCAGACATGCTCCGCAAGGACGGCAAAGACCCCAACCAGTTCACCATTTCCAGACGGGCCGGCAAGGTCTCGCTGGGCAAAGCTGGCTCTCCTGAGACCACCGCTTCCTCTCTGCCCAGCCTGCGCCCCTCAGTCATCCGCCCTGCCCCCACCCTGGACCTCAGTCTCCTGGGCAGCACAGCCACCGCCATCCTTACCGGTGCTGGCTGCCTGGCGGCCGTGCCAGGGCTCCTGGGCCAAGAGCAACACCCTGGGTCTATGCTGAAGCCAGGTGAGAGGGCAGTAAGCCTGAGTGAGGCCAACCCTTCCAGCACCTCCACCATCCTGAGCAGGGTGGACTCCGTCAGCCCGACAGGGGGACTTTTCAACACgccaccccccacaccccctgACCTCTGCCTGCAGGACTTCAGTGACCTGCGGCTGCTGGTGGATGCGGCGCTGCAGCGGGCAGCCGAGTTGGAGAACCAGCAGATAGAGAGGAGGCCGAGCGGGACGGGCGAGGGCGAGGCCAGGGAGTATGAGGGCGTCCGTGCAGAGCCACCACACGAGGCCCCAAGGGAACTCGACTCGTCTGGGGAGAAAGCCCTGCTTGACCAGGGAGAGGAGAAGATTGCTGTCCGTGGGCGGACCTCTCCAAGTACACAGACTGCATCCCCGGCAGCCGACCGCAGCCGTGGCCAGAGGGCCGAGGCTGTGACTCTGTCCTCCGCAGCGCCCAGCGTGCTGGGCCTGGGTGTGTATGAGCAGAGCGTGTGGAGCATGGTGCCGCCACCAAGCGCAGGGCCCTGTGGGTGGGGGCCCCAGCATTCCCTGCTTTCTGTGAGAGAGGCCGTTAATTAGAGCCCAGAAAGGAAACTACAGGAGATGAGGCCACTGCAAAGATCTGATTTTCATCTAGGGCAATGTTGgcacactatttttttttctccctcttttaTTCTGTCTACACATGACTCGAATATTTCCAAGTATGCC

Function

GO: NA

KEGG:

id description
K19553 TGIF2; homeobox protein TGIF2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36650 lncRNA downstream 3355 45599559 ~ 45714037 (-) True G29249
TU36651 lncRNA downstream 3355 45668901 ~ 45714037 (-) False G29249
TU36654 lncRNA downstream 3355 45686238 ~ 45714037 (-) False G29249
TU36551 lncRNA downstream 226502 45490007 ~ 45490890 (-) True G29206
TU36533 lncRNA downstream 254862 45461779 ~ 45462530 (-) True G29192
TU36696 lncRNA upstream 69251 45793678 ~ 45793951 (-) True G29284
TU36706 lncRNA upstream 254833 45979260 ~ 45979468 (-) True G29294
TU36772 lncRNA upstream 526236 46250663 ~ 46251181 (-) True G29348
TU36778 lncRNA upstream 543466 46267893 ~ 46268278 (-) True G29354
TU36803 lncRNA upstream 931807 46656234 ~ 46656566 (-) True G29375
AMCG00008215 mRNA downstream 55045 45645248 ~ 45662347 (-) True AMCG00008215
AMCG00008217 mRNA downstream 75589 45640286 ~ 45641803 (-) True AMCG00008217
AMCG00008207 mRNA downstream 170704 45539757 ~ 45546688 (-) True AMCG00008207
AMCG00008208 mRNA downstream 180337 45525227 ~ 45537055 (-) True AMCG00008208
AMCG00008206 mRNA downstream 198682 45504042 ~ 45518710 (-) True AMCG00008206
AMCG00008214 mRNA upstream 13061 45737488 ~ 45760782 (-) True AMCG00008214
AMCG00008216 mRNA upstream 53035 45777462 ~ 45786981 (-) True AMCG00008216
AMCG00008222 mRNA upstream 387509 46111936 ~ 46123767 (-) True AMCG00008222
AMCG00008223 mRNA upstream 413321 46137748 ~ 46150163 (-) True AMCG00008223
AMCG00008224 mRNA upstream 476365 46200792 ~ 46234987 (-) True AMCG00008224
TU36269 other downstream 1299196 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2952738 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3867502 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4515567 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4700144 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 326268 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 756519 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 1989507 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2399498 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2556915 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile