RNA id: AMCG00008215


Basic Information

Item Value
RNA id AMCG00008215
length 5329
RNA type mRNA
GC content 0.49
exon number 20
gene id AMCG00008215
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45645248 ~ 45662347 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAGAGTGGGGAATGCTGGGAGTGCTGGTGTCTGATGGCAGCTGGGGGGTCTGGGGAACAGAGCCTCATGGGGAGGGTGcccctccacccctccctcTGGTCTCAGACCATGAACTACGTGGGCCAGCTGGCGGAGACCGTCTTCGTGACGGTGAAGGAGCTCTATAGGGGCCTGAACCCGGCCACGCTGACCGGGGGCATCGATGTGATTGTGGTGCGGCAGCCCGATGGCTCCCTGCAGTGCTCCCCTTTCCACGTGCGCTTCGGAAAGCTGGGCGTGCTGCGCTCCCGCGAGAAAGTGGTGGACATCGAGATCAACGGGGAGCCTGTGGAGCTGCACATGAAGCTGGGAGACAACGGGGAGGCCTTCTTTGTGGAAGAGAACGAGGACTTCCAGGAGAGGGTACCGGCGCACCTCTGCACTTCTCCGATCACCCTGGAGGGCAACGAAGACAGCGAGTCCCCCCTCAATTCCACGTCCCGAAGGAAGAAGCGTCGCCGCAAACGCACTCGCTCAGACGCCCCCTGGAGAGAAAAGGAGGACTCGTCTGCTGACGAGTGGGACGTCCCAGAGAGTGAGGGGCCAGGGGAGGAGCTCACCGCCAACATTGTACCTAGCGCTTCAGTCTACTATTCGTTTTCGGAGGAGCCAATGGAAAACCTGGGAAGCGCTCAGTCCCGGGGTGTCCATCCCTACTCAGACGGGGAGTGGTCGCCGTCCGAAAGTGTGTTCCAGAGCCGGCCTTCTTCCCCAAAGAGTGACTCTGAGCTGCTGGTTAAGCCCCAGGAGTCCACAGGCCCCCAAATGCACTGGGCTTGGGGAAGCTTCCCAAAGGTCAGACCAAGTGACAGAGTTTCAGCAGAGGCCCCGTCAGTCTCCACTTCCATCCAGCACTCCACGAATACCCACTTCCGCACCATCCAGCGGCAGGACTCCTTCGATCTGCATACTGAGGGGCTTGAGGGGAGCACTGTTATAGGCAGGGGGGTGACTGTCCTGAGGCCAGAGCCAAGAGGCAGACCACCAGGGCCGCCCACCCCAGACACAGTGCCACCTACAGCAGAGCCAGAGTCATGTACCACAGATTCTGCCCTGGGGGAAACCACACCACCGCCAACAAACTCTGTCATCCTTTATTCAGATGACACAGGGCCACTGTCACTGGAGTCACTGCAAGCAGAGGCAGCCAGCATATCAGAATCTAAAACTCCCATGGAAAAGAGCACTGAACTACCAGGGGTCTCAGCTGCCTGTCCAGGCCAAGCTGAGGAAATGGCAGCCCAGGATATTAGACTTGAGATCCCAGAACAGGGCAGGGCAGATGGAGTGGCTGAAGAGCAGACCCAGATTGTGACCGCAGAGGGAGAAAGCATCGGGACAGAGGGCCCTCAGAGCTGTCAAGCCACGGAGAGTGTCAAGGTGACGGAGAGCTCCCAGGGGGGTGCGGTAACTTCTGCAGAAACGGCTCTGAATCCTGAACCTCAAGAGAAGAAGAAAGGTTTGCAAGTTAAACGCAGCCAACATCTCGGGCCGACCGATATCTACCTAGATGACCTGACCAACCTGGACCCAGAAGTCGCAGCTCTCTACTTCCCCAAGAGCGACAATGATATGGGTCCTCGGCCCGGGGCGGAGCCAGGGTTACAATTCGATAACCAGTCACCGCAGTCGGTGGGCAGCGGGGCGATGGACAGTGGCACAGAGTACCTGTCTGACTCCACAGGGGACCTGCCAGAAGTCACCATGTCCTTGTGCGGCAAGGTGGTTGACACCAGTCACATCAACAAAGAGAAATTCATGGAACATGTGGTCAGCTTCCAGGACTTTGTCAACAACCCTGGGATCATTGAGGACCCGAACCTTGTCATCTGTATCAATTCCAAGTACTATAACTGGGCTGTCGCTGCTCCGATGGTCTTGTCAATGCAAGCTTTTCAGAAAAACTTACCAaagAGTGCTGTAGACCAACTAGTAAAGGACAAGATGCCAAAGAAATCAGGAAGATGGTGGTTCTCCTGGCGTAGGAAAGACCTGAACACTAACCAGCCGGAGTTGAAAGATGGCAACAACGGGGAGCCAAGGGAGATGGCGGTGCCTGAGCAGGGTCCCTCCACCTCACAGGATAAACGCGAGGAGACATCAAGCGACGATGATTCTAGGACAGCAAGGGGGACACGGCCATTGGAGCCCCTCTCCACAGCGCAGTGTATCAGTCAGATGTACCGGAAGTCTCTGCGCCTCACCTCCGAGCAGATTGAGCGTCTGAACCTGCGGGAGGGGGCAAATGAGATTGTATTCAGTGTGACCACTCAGTACCAGGGCACATGTCGCTGTGAGGCCGCCATCTACCTGTGGAACTGGGACGACAGGGTCATCATCTCGGACATTGATGGCACCATCACCAAGTCCGACGCTCTGGGCCACATTCTGCCTCAGCTGGGGAAAGACTGGACCCACAGGGGGATTGCCAAGCTGTATCACAAAATCCACCAGAATGGCTACAAGTTCCTGTACTGCTCAGCAAGAGCTATCGGCATGGCTGACATCACCAAGGGCTACCTGCAGTGGGTGAATGACAGAGGCACCGTCCTGCCCAAGGGTCCCGTGCTGCTGGCCCCCAGCAGCCTCTTCTCTGCTCTGCACAGGGAGGTGATTGAGAAGAAGCCAGAGGTGTTCAAGATTGCTTGTCTGACAGACATCAGGAATCTGTTCAACCCCAAGAGACATCCCTTCTACGCAGCTTTTGGAAACCGGACCAATGATGTTTATGCTTATAAGGAGGTGGGAGTGCCAGAATCGAGGATCTTCACTGTGAATCCCAAAGGAGAACTcatccaagaacaaaccaaaggCAACAAGTCATCGTACTCCCGGCTCAGTGAACTCGTAGAGCACCTCTTTCCCCTCCTTGTACAGGGCAAGAGCTCCTCCTTTGACTGCCCAGACTACAGTCACTTCTCCTTCTGGAGGGAGCCTCTGCCAGCCCTGGACCTCAGTGTCCTACAGTAGCCTCCTGTCTCACTCTGGGCTCCCTCTAGGGAGAGCAGGGACACTCTCCGTTCATGGCAGTGTAATAATAGCAGTCCTGTAGAGCTTCAGGGGAATCTCCTGGGTTTGTTAGCTacactttttttacatttctgttgtcCTAGAATGATGCACCAAAGACCGAGCCAAGGACAGGTACCGAAGGGAAAGTCAACCTGGTCCAACCCATCCTAGAGGTGGCACCATTTTGAGTGACGGGGCCAGATTTTGGGGCTGACTTTCTGAATGTGCTACACTTTACTGCCATTTACTCTTGGGTTTAAAGTGGTGCATCAGACTGCCCATGCCTTATCTCATGCACCAAAAATGCaagatgattttattttgcactgaatGTCCACAGGTTTTCAGGTCAGTTTGttagtctttatttaatttttttccgaTTGCATGACAATCTGTTTTGGGAGCACCAAGGAAATGGTAACCTGAATTGTCAAAATAAGCTGAATCTACTTTTATACTTAGTTTTGGGATTGTATTATTATGGGTGATGTTCTTTTCTTGCTACTCCCTCCATTTTCTATGGTTTCAAAACTGAATGTTTTAAGCACAATGCTAGCACTGTCTAATCTCCATGCATTGCACAGCATTCTTATAATTGAGAAGAAGTAATAAAGGAGGTGTATGTGTAGGCACTTTCTACAGCGAAATGTTACAAAATGACGACACTGGAAATGTGTGCCAAAACAAGAATGTTCTAGTTTGAGTTTGATTTAACAAGGAATATAATCCAGTTGATTTAATATCTTCAAGTGGTGTCTTAGGTCTGGGTTGCACAGCAAAAACCTTCAGAACAACCAATGTATATTAATCAGTGTCTCCCAATACTGTGCGATTAATTGTTGGAAGCAGCAATTAGCATATCCCAACAAAACCATCAGAACTAGATGAGAACTTCAGAGACGGCTTAAAACAGTTAATGAACCTCACTGTGCattgtgtcattttaattcTGGCCAGTTAGTGTGTATCATTAAGGTAGCAAATTACTTCACCTATTAATGTGAGCAGGATGTTCGTCCTTGGAGTCGACTTTTGGTATAACGAGGTCGGCCACAGTACAGAGCTTCCCTTCGCAATTAACTTCTCCCTGTGGACACGAGATTCAGCACTGCCTGCATTGGAAGTGGAACACTAGAAGGCAGAACACATGAACCTTCAAGGAAAGATGATCTCTTTAGGTGACACTAGCAAACAAAGACTGGACATTTGACACAAATGGgaatggaaattatattttatttatctacttTTGGGCCAAAGTTGCACATTATCTATTCAAACACTAAGAAAACACTACCTTGATATGATTTATACCATTGCAGACTATTGTGAATTCTTATCATACTTTACAAACCTGttatcaattaaacaaaaaagacaaaaaaaaaaaaaaaatttcatGCATATCTGGAAAATACTGCTTCTTTGGTTTTAAATACTTGGtcttttctttccattattattatgttgtttgtttctttttggtaCTTTGGATAACTTGCAAAAAACAATACCTGAATGACtagttattaaaattgtatctAGTAAAGATAcagtgacattttttaattgtacatccATAATTAGATTGCCAGGAGTatgtattttactaaataaaaggTTATAAAATATGCAGCCAGTCTATTACAGAGTGCAGTCAAGCCACTTATATCAGCGATCTGAAAGGGATAGAAGTTCCAGACCTCTGTCTCTCAGTCCTCATTGAAGACTGCAGTCTGAGATAAGGGCTACtggaaagaaataaatacaaataatattgaattgttAGAAGTTGGTGTATGTGAAGCTTTTTACTGTGATGTGCCCCAGTTCACAAGCTATAGTTTGGAAAGGTACAATATGCTATAAGACCATTTGTCATGAAAGGAGAGATGGACTGGTCAGATGCTTCATTTGAACTGTTGTTGGTCATGGGATTGTTTTTCATCTTGGAAAAGATGGTGAGCTCCACAATCCTGTTGATGACATCCTCCGATAGTGACCACCCAAGGAAATGCATGATCGATTTCCTGTCTCAGGTTCTGGCAGGGAAGAGAAGCCGTGAAAGCGTGGTAAGGCGGAGAtctgattttatgttttaattgtttactcAAATCGTGTTACCAGAAACTTGATTTGccgaaaatgtattcaaatagcCCTTCAAAAGGGAAACTTTCAATTCTGGTAGTAATACTATTAAAGGCTGAAATTATATCCATCTGTGTCTGTCTATTatgtagagcaggggttcccaaccctgctcctggagg

Function

GO: NA

KEGG:

id description
K15728 LPIN; phosphatidate phosphatase LPIN

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36551 lncRNA downstream 154358 45490007 ~ 45490890 (-) True G29206
TU36533 lncRNA downstream 182718 45461779 ~ 45462530 (-) True G29192
TU36523 lncRNA downstream 224786 45419590 ~ 45420462 (-) True G29182
TU36509 lncRNA downstream 291162 45353807 ~ 45354086 (-) True G29170
TU36439 lncRNA downstream 493921 45149501 ~ 45151327 (-) False AMCG00008192
TU36651 lncRNA upstream 6554 45668901 ~ 45714037 (-) False G29249
TU36654 lncRNA upstream 23891 45686238 ~ 45714037 (-) False G29249
TU36696 lncRNA upstream 131331 45793678 ~ 45793951 (-) True G29284
TU36706 lncRNA upstream 316913 45979260 ~ 45979468 (-) True G29294
TU36772 lncRNA upstream 588316 46250663 ~ 46251181 (-) True G29348
AMCG00008217 mRNA downstream 3445 45640286 ~ 45641803 (-) True AMCG00008217
AMCG00008207 mRNA downstream 98560 45539757 ~ 45546688 (-) True AMCG00008207
AMCG00008208 mRNA downstream 108193 45525227 ~ 45537055 (-) True AMCG00008208
AMCG00008206 mRNA downstream 126538 45504042 ~ 45518710 (-) True AMCG00008206
AMCG00008209 mRNA downstream 141686 45498106 ~ 45503562 (-) True AMCG00008209
AMCG00008213 mRNA upstream 55045 45717392 ~ 45724427 (-) True AMCG00008213
AMCG00008214 mRNA upstream 75141 45737488 ~ 45760782 (-) True AMCG00008214
AMCG00008216 mRNA upstream 115115 45777462 ~ 45786981 (-) True AMCG00008216
AMCG00008222 mRNA upstream 449589 46111936 ~ 46123767 (-) True AMCG00008222
AMCG00008223 mRNA upstream 475401 46137748 ~ 46150163 (-) True AMCG00008223
TU36269 other downstream 1227052 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2880594 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3795358 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4443423 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4628000 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 388348 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 818599 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 2051587 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2461578 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2618995 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000130_00247327_00260347.mRNA True 3817 mRNA 0.46 20 CI01000130 247327 ~ 260954 (+)