RNA id: AMCG00008216


Basic Information

Item Value
RNA id AMCG00008216
length 1848
RNA type mRNA
GC content 0.63
exon number 4
gene id AMCG00008216
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45777462 ~ 45786981 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAGGGTTAGGAGCCAACCGCAGTCGCCACCTGTCTGACTCCTGCGACCCGTCGGCAGGCCCCCCGGAGCCCCTGTACCCCCCAGGCACGGACCCCCGCAGCCCTTACCTGCTGAGCCCTGGCATCGACCCTTACGGAACCATGGACCCCCACCACTTCACCCCTCCCACCCCCAGCTCCCTGCCCTCCGACTGCATGCTACCCCTCAACAACCAGCTCTCCAACAGCAGCACCTTCCCCCGCATCCACTACAACTCCCACTTCGACCAGGCGGACTTCTCCCCCAGCTCCGCACCCGGCAGAGGCAGCATCGGTGGCATCAGCACGGGCACCACCATGGGCACCTCCATGTCCATGGGGATGGGAATGGGCATGGGAATGGGCATGGGGATGGGCATGAGCGGTGCCCCCATGATCACCAGTGGCTCGGCCACCATCTCGGGGGGCAGCAAGATGAACCGGTTGCCCCCCAACCTGCTGGACCAGTTCGAGAAGCAGCTGCCCATCCACCGCGACGGCTTCAGCACGCTGCAGTTCCACCGGAGTGGGGCGGCCAAGCAGCGCAGCGAGAGCCCGGGACGCATCCGCTACCTGGTGCACTCCGTCCAGAAGCTCTTCGCCAAGTCGCAGTCCCTTGAGAGCTCGGTGAAGGGCAGCATGAACGGGCGCTTTGCCAACAGTACTAGCACCACTGGCACCCCCACTGAGGATACCAAACAGAACCGGCGCAGCAAGAGCAAAGACCGGGCCAAGACCGAGGGCAGCAAGCGCAGACCACGGTCCAACATGTCGGGCTTCTGGAGCTCTGACGACAACCTGGACGGGGATGCCAGCAACTACCGCAACCCCATGGCTCTCATGACACTGGGTCGCCAAGTGCCCGACAGCCAAGGCCCTTCTAAGTACTTCATGCATGCTTACAACACCATCAGTGAGCACACGCTCAAGGCCTCCAAGAGCAACAATGACCTCAAGTTCCAGGCCTGTCCCTCTCTGCCAGGccctgggggagggggaggaggaggtgggggaggtgggagtggaggaggaggagggggaggttCTGGGGGAGACAAGTTTGTCAAACGGGGCTCCTGGTCAACCCTGACTCTTAGCCAGGCCAGACAAGTGTGTCAAAAGGGCTCGGCCACCATTGACAAGGCGCTGCTCAAATCCAAGTCCTGCCACCAAGATCTGTCATGCCAGTTCCTGCAGGTACCTCTGGGGGATTGGAACAGCACACTGACCCGGGACAGGGGACTGGGCTCCAGTGAGATCCCCTGCCGGCGGATGCGCAGTGGCAGCTATATCAAGGCCATGGGGGACGAGGAAAGCGAGGACTCGGAGGGGAGCCCCAAACCCTCACCCAAGACGGCCGCCCGGAGACAGAGCTACCTGAAGGCCACGCAGCAGTCTCTGAGCGAGCAGCTTCCCCCACGCAACTCCCCCTTCCAACACTGGGATGACGAGGACTTCAGTCAGGGCAGCAACACTCTGGGAAAAAACAGCTGCAGTAGCCAGGTCCGGGAGCTGGAGGTGAGTCGCCAGTACGAGGAGGCGTGTGAGTCTGTGTTCAGTGAGGTGGAGTCCCAGGCCGTGGAGGCTCTCGACCTGCCCCTGCCCACTTGCTTCCGCTCACGCAGCCACAGTTACCTGCGCGCCATCCAGGCTGGCTGTTCCCAGGATGACGACACTGCCTCCGTTGGCTCAGAGTCACCGCCTCCCTCCACCACCACCGTCCGCACCTACAGCATCAGCACCAGTGAGTGTCCCGTCTCCactgaggggaggggagggggagatcCTGCACAAAACAATGCACAGGTCCACAGCAACTCTTTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36650 lncRNA downstream 63425 45599559 ~ 45714037 (-) True G29249
TU36651 lncRNA downstream 63425 45668901 ~ 45714037 (-) False G29249
TU36654 lncRNA downstream 63425 45686238 ~ 45714037 (-) False G29249
TU36551 lncRNA downstream 286572 45490007 ~ 45490890 (-) True G29206
TU36533 lncRNA downstream 314932 45461779 ~ 45462530 (-) True G29192
TU36696 lncRNA upstream 6697 45793678 ~ 45793951 (-) True G29284
TU36706 lncRNA upstream 192279 45979260 ~ 45979468 (-) True G29294
TU36772 lncRNA upstream 463682 46250663 ~ 46251181 (-) True G29348
TU36778 lncRNA upstream 480912 46267893 ~ 46268278 (-) True G29354
TU36803 lncRNA upstream 869253 46656234 ~ 46656566 (-) True G29375
AMCG00008214 mRNA downstream 16680 45737488 ~ 45760782 (-) True AMCG00008214
AMCG00008213 mRNA downstream 53035 45717392 ~ 45724427 (-) True AMCG00008213
AMCG00008215 mRNA downstream 115115 45645248 ~ 45662347 (-) True AMCG00008215
AMCG00008217 mRNA downstream 135659 45640286 ~ 45641803 (-) True AMCG00008217
AMCG00008207 mRNA downstream 230774 45539757 ~ 45546688 (-) True AMCG00008207
AMCG00008222 mRNA upstream 324955 46111936 ~ 46123767 (-) True AMCG00008222
AMCG00008223 mRNA upstream 350767 46137748 ~ 46150163 (-) True AMCG00008223
AMCG00008224 mRNA upstream 413811 46200792 ~ 46234987 (-) True AMCG00008224
AMCG00008225 mRNA upstream 448022 46235003 ~ 46238529 (-) True AMCG00008225
AMCG00008228 mRNA upstream 960212 46747193 ~ 46747558 (-) True AMCG00008228
TU36269 other downstream 1359266 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 3012808 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3927572 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4575637 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4760214 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 263714 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 693965 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 1926953 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2336944 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2494361 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035420 True 1727 mRNA 0.55 4 NC_007131.7 14258545 ~ 14321359 (-)
grasscarp (Ctenopharyngodon idella) CI01000193_00257738_00262076.mRNA True 3120 mRNA 0.50 3 CI01000193 256429 ~ 262504 (+)